[1]
|
Ginwal, H.S., Rawat, P.S. and Srivastava, R.L. (2004) Seed Source Variation in Growth Performance and Oil Yield of Jatropha curcas Linn. in Central India. Silvae Genetics, 53, 186-192.
|
[2]
|
Ikbal, K., Boora, S. and Dhillon, R.S. (2010) Evaluation of Genetic Diversity in Jatropha curcas L. Using RAPD Markers. Indian Journal of Biotechnology, 9, 50-57.
|
[3]
|
Tatikonda, L., Wani, S.P., Kannan, S., Beerelli, N., Sreedevi, T.K., Hoisington, D.A., Devi P. and Varshney, R.K. (2009) AFLP-Based Molecular Characterization of an Elite Germplasm Collection of Jatropha curcas L., a Biofuel Plant. Plant Science, 176, 505-513. http://dx.doi.org/10.1016/j.plantsci.2009.01.006
|
[4]
|
Jubera, M.A., Janagoudar, B.S., Biradar, D.P., Ravikumar, R.L., Koti, R.V. and Patil, S.J. (2009) Genetic Diversity Analysis of Elite Jatropha curcas (L.) Genotypes Using Randomly Amplified Polymorphic DNA Markers. Karnataka. Journal of Agricultural Sciences, 22, 293-295.
|
[5]
|
Williams, J.G.K., Kubelik, A.R., Livak, K.J., Rafalski, J.A. and Tingey, S.V. (1990) DNA Polymorphisms Amplified by Arbitrary Primers Are Useful as Genetic Markers. Nucleic Acids Research, 18, 6531-6535. http://dx.doi.org/10.1093/nar/18.22.6531
|
[6]
|
Alhani, M.C. and Wilkinson, M.J. (1998) Inter Simple Sequence Repeat Polymerase Chain Reaction for the Detection of Somaclonal Variation. Plant Breeding, 117, 573-575. http://dx.doi.org/10.1111/j.1439-0523.1998.tb02210.x
|
[7]
|
Blair, M.W., Panaud, O. and McCouch, S.R. (1999) Inter-Simple Sequence Repeat (ISSR) Amplification for Analysis of Microsatellite Motif Frequency and Fingerprinting in Rice (Oryza sativa L.). Theoretical and Applied Genetics, 98, 780-792. http://dx.doi.org/10.1007/s001220051135
|
[8]
|
Vos, P., Hogers, R., Bleeker, M., Reijans, M., van de Lee, T., Hornes, M., Frijters, A., Pot, J., Peleman, J., Zabeau, M. and Kuiper, M. (1995) AFLP: A New Technique for DNA Fingerprinting. Nucleic Acids Research, 23, 4407-4414. http://dx.doi.org/10.1093/nar/23.21.4407
|
[9]
|
Zhu, J., Gale, M.D., Quarrie, S., Jackson, M.T. and Bryan, G.J. (1998) AFLP Markers for the Study of Rice Biodiversity. Theoretical and Applied Genetics, 96, 602-611. http://dx.doi.org/10.1007/s001220050778
|
[10]
|
Basha, S.D., Francis, G., Makkar, H.P.S., Becker, K. and Sujatha, M. (2009) A Comparative Study of Biochemical Traits and Molecular Markers for Assessment of Genetic Relationships between Jatropha curcas L. Germplasm from Different Countries. Plant Science, 176, 812-823. http://dx.doi.org/10.1016/j.plantsci.2009.03.008
|
[11]
|
Basha, S.D. and Sujatha, M. (2007) Inter and Intra-Population Variability of Jatropha curcas L. Characterized by RAPD and ISSR Markers and Development of Population-Specific SCAR Markers. Euphytica, 156, 375-386. http://dx.doi.org/10.1007/s10681-007-9387-5
|
[12]
|
Sujatha, M., Reddy, T.P. and Mahasi, M.J. (2008) Role of Biotechnological Interventions in the Improvement of Castor (Ricinus communis L.) and Jatropha curcas L. Biotechnology Advances, 26, 424-435. http://dx.doi.org/10.1016/j.biotechadv.2008.05.004
|
[13]
|
Vieux, E.F., Kwok, P.Y. and Miller, R.D. (2002) Primer Design for PCR and Sequencing in High-Throughput Analysis of SNPs. BioTechniques, 32, S28-S32.
|
[14]
|
Levinson, G. and Gutman, G.A. (1987) Slipped-Strand Mispairing: A Major Mechanism for DNA Sequence Evolution. Molecular Biology and Evolution, 4, 203-221.
|
[15]
|
Chakravarthi, B.K. and Naravaneni, R. (2006) SSR Marker Based DNA Fingerprinting and Diversity Study in Rice (Oryza sativa. L.). African Journal of Biotechnology, 5, 684-688.
|
[16]
|
Tripathi, K.P., Roy, S., Khan, F., Shasany, A.K., Sharma, A. and Khanuja, S.P.S. (2008) Identification of SSR-ESTs Corresponding to Alkaloid, Phenylpropanoid and Terpenoid Biosynthesis in MAPs. Online Journal of Bioinformatics, 9, 78-91.
|
[17]
|
Varshney, R.K., Graner, A. and Sorrells, M.E. (2005) Genic Microsatellite Markers in Plants: Features and Applications. Trends in Biotechnology, 23, 48-55. http://dx.doi.org/10.1016/j.tibtech.2004.11.005
|
[18]
|
Raji, A.A.J., Anderson, J.V., Kolade, O.A., Ugwu, C.D., Dixon, A.G.O. and Ingelbrecht, I.L. (2009) Gene-Based Microsatellites for Cassava (Manihot esculenta Crantz): Prevalence, Polymorphisms, and Cross-Taxa Utility. BMC Plant Biology, 9, 1471-1429. http://www.biomedcentral.com/1471-2229/9/118
|
[19]
|
Wang, Y.H., Liu, S.J., Ji, S.L., Zhang, W.W., Wang, C.M., Jiang, L. and Wan, J.M. (2005) Fine Mapping and Marker-Assisted Selection (MAS) of a Low Glutelin Content Gene in Rice. Cell Research, 15, 622-630. http://dx.doi.org/10.1038/sj.cr.7290332
|
[20]
|
Carneiro, F.F., Santos, J.B. and Leite, M.E. (2010) Marker-Assisted Backcrossing Using Microsatellites and Validation of SCAR Phs Marker for Resistance to White Mold in Common Bean. Electronic Journal of Biotechnology, 13, Online Version. http://ejb.ucv.cl/content/vol13/issue6/full/13/index.html
|
[21]
|
Gupta, S. and Prasad, M. (2009) Development and Characterization of Genic SSR Markers in Medicago truncatula and Their Transferability in Leguminous and Non-Leguminous Species. Genome, 52, 761-771. http://dx.doi.org/10.1139/G09-051
|
[22]
|
Wen, M., Wang, H., Xia, Z., Zou, M., Lu, C. and Wang, W. (2010) Development of EST-SSR and Genomic-SSR Markers to Assess Genetic Diversity in Jatropha curcas L. BMC Resarch Notes, 3, 42. http://www.biomedcentral.com/1756-0500/3/42
|
[23]
|
Morgante, M., Hanafey, M. and Powell, W. (2002) Microsatellites Are Preferentially Associated with Nonrepetitive DNA in Plant Genomes. Nature Genetics, 30, 194-200. http://dx.doi.org/10.1038/ng822
|
[24]
|
Riju, A, Chandrasekar, A. and Arunachalam, V. (2007) Mining for Single Nucleotide Polymorphisms and Insertions / Deletions in Expressed Sequence Tag Libraries of Oil Palm. Bioinformation, 2, 128-131. http://dx.doi.org/10.6026/97320630002128
|
[25]
|
Kumpatla, S.P. and Mukhopadhyay, S. (2005) Mining and Survey of Simple Sequence Repeats in Expressed Sequence Tags of Dicotyledonous Species. Genome, 48, 985-998. http://dx.doi.org/10.1139/g05-060
|
[26]
|
Garcia, R.A.V., Rangel, P.N., Brondani, C., Martins, W.S., Melo, L.C., Carneiro, M.S., Borba, T.C. and Brondani, R.P. (2011) The Characterization of a New Set of EST-Derived Simple Sequence Repeat (SSR) Markers as a Resource for the Genetic Analysis of Phaseolus vulgaris. BMC Genetic, 12, 41-54. http://dx.doi.org/10.1186/1471-2156-12-41 http://www.biomedcentral.com/1471-2156/12/41
|
[27]
|
Ceresini, P.C., Silva, C.L.S.P., Missio, R.F., Souza, E.C., Fischer, C.N., Guillherme, I.R., Gregorio, I., Da Silva, E.H.T., Cicarelli, R.M.B., Silva, M.T.A., Garcia, J.F., Avelar, G.A., Porto Neto, L.R., Marcon, A.R., Bacci Jr., M. and Marini, D.C. (2005) Satellyptus: Analysis and Database of Microsatellites from ESTs of Eucalyptus. Genetics and Molecular Biology, 28, 589-600.
|
[28]
|
Pinto, L.R., Oliveira, K.M., Ulian, E.C., Garcia, A.A.F. and De Souza, A.P. (2004) Survey in the Sugarcane Expressed Sequence Tag Database (SUCEST) for Simple Sequence Repeats. Genome, 47, 795-804. http://dx.doi.org/10.1139/g04-055
|
[29]
|
Eujayl, I., Sledge, M.K., Wang, L., May, G.D., Chekhovskiy, K., Zwonitzer, J.C. and Mian, M.A.R. (2004) Medicago truncatula EST-SSRs Reveal Cross-Species Genetic Markers for Medicago spp. Theoretical and Applied Genetics, 108, 414-422. http://dx.doi.org/10.1007/s00122-003-1450-6
|
[30]
|
Fraser, L.G., Harvey, C.F., Crowhurst, R.N. and Silva, H.N. (2003) EST-Derived Microsatellites from Actinidia Species and Their Potential for Mapping. Theoretical and Applied Genetics, 108, 1010-1016. http://dx.doi.org/10.1007/s00122-003-1517-4
|
[31]
|
Ellis, J.R. and Burke, J.M. (2007) EST-SSRs as a Resource for Population Genetic Analyses. Heredity, 99, 125-132. http://dx.doi.org/10.1038/sj.hdy.6801001
|
[32]
|
Sato, K., Nankaku, N. and Takeda, K. (2009) A high-Density Transcript Linkage Map of Barley Derived from a Single Population. Heredity, 103, 110-117. http://dx.doi.org/10.1038/hdy.2009.57
|
[33]
|
Shirasawa, K., Oyama, M., Hirakawa, H., Sato, S., Tabata, S., Fujioka, T., et al. (2011) An EST-SSR Linkage Map of Raphanus sativus and Comparative Genomics of the Brassicaceae. DNA Research, 18, 221-232. http://dx.doi.org/10.1093/dnares/dsr013
|
[34]
|
Varshney, R.K., Mahendar, T., Aggarwal, R.K. and Börner, A. (2007) Genetic Molecular Markers in Plants: Development and Applications. In: Varshney, R.K. and Tuberosa, R., Eds., Genomics-Assisted Crop Improvement: 1: Genomics Approaches and Platforms, Springer, Berlin, 13-29.
|
[35]
|
Wang, C.M., Liu, P., Yi, C., Gu, K., Sun, F., Li, L., Lo, L.C., Liu, X., Feng, F., Lin, G., Cao, S., Hong, Y., Yi, Z. and Yue, G.H. (2011) A First Generation Microsatellite and SNP-based Linkage Map of Jatropha. PLoS ONE, 6, e23632. http://dx.doi.org/10.1371/journal.pone.0023632
|
[36]
|
NCBI’s dbEST Database. http://www.ncbi.nlm.nih.gov/
|
[37]
|
EGassembler. http://egassembler.hgc.jp/
|
[38]
|
SSRlocator Version 1. [Standalone software] http://www.ufpel.tche.br/faem/fitotecnia/fitomelhoramento/faleconosco.html
|
[39]
|
TAIR. [online] http://www.arabidopsis.org/index.jsp
|
[40]
|
Locus Identifiers at Bulk Data Retrieval System of TAIR. http://www.arabidopsis.org/tools/bulk/go/index.jsp
|
[41]
|
Carvalho, C.R., Clarindo, W.R., Praca, M.M., Araújo, F.S. and Carels, N. (2008) Genome Size, Base Composition and Karyotype of Jatropha curcas L., an Important Biofuel Plant. Plant Science, 174, 613-617.
|
[42]
|
Raju, N.L., Gnanesh, B.N., Lekha, P., Jayashree, B., Pande, S., Hiremath, P.J., Byregowda, M., Singh, N.K. and Varshney, R.K. (2010) The First Set of EST Resource for Gene Discovery and Marker Development in Pigeon Pea (Cajanus cajan L.). BMC Plant Biology, 10, 45. http://www.biomedcentral.com/1471-2229/10/45
|
[43]
|
Varshney, R.K., Thiel, T., Stein, N., Langridge, P. and Graner, A. (2002) In Silico Analysis on Frequency and Distribution of Microsatellites in ESTs of Some Cereal Species. Cell and Molecular Biology Letters, 7, 537-546.
|
[44]
|
Cardle, L., Ramsay, L., Milbourne, D., Macaulay, M., Marshall, D. and Waug, R. (2000) Computational and Experimental Characterization of Physically Clustered Simple Sequence Repeats in Plants. Genetics, 156, 847-854.
|
[45]
|
Metzgar, D., Bytof, J. and Wills, C. (2000) Selection against Frameshift Mutations Limits Microsatellite Expansion in Coding DNA. Genome Research, 10, 72-80.
|
[46]
|
Morgante, M. and Olivieri, A.M. (1993) PCR-Amplified Microsatellites as Markers in Plant Genetics. The Plant Journal, 3, 175-182.
|
[47]
|
Cho, Y.G., Ishii, T., Temnykh, S., Chen, X., Lipovich, L., McCouch, S.R., Park, W.D., Ayres, N. and Cartinhour, S. (2000) Diversity of Microsatellites Derived from Genomic Libraries and GenBank Sequences in Rice (Oryza sativa L.). Theoretical Applied Genetics, 100, 713-722. http://dx.doi.org/10.1007/s001220051343
|
[48]
|
La Rota, M., Kantety, R.V., Yu, J.K. and Sorrells, M.E. (2005) Nonrandom Distribution and Frequencies of Genomic and EST-Derived Microsatellite Markers in Rice, Wheat, and Barley. BMC Genomics, 6, 23. http://www.biomedcentral.com/1471-2164/6/23
|
[49]
|
Temnykh, S., DeClerck, G., Lukashova, A., Lipovich, L., Cartinhour, S. and McCouch, S. (2001) Computational and Experimental Analysis of Microsatellites in Rice (Oryza sativa L.): Frequency, Length Variation, Transposon Associations, and Genetic Marker Potential. Genome Research, 11, 1441-1452. http://dx.doi.org/10.1101/gr.184001
|
[50]
|
Powell, W., Morgante, M., McDevitt, R., Vendramin, G.G. and Rafalski, J.A. (1995) Polymorphic Simple Sequence Repeat Regions in Chloroplast Genomes: Applications to the Population Genetics of Pines. Proceedings of National Academy of Sciences of the United States of America, 92, 7759-7763. http://dx.doi.org/10.1073/pnas.92.17.7759
|