Dr. Yonggan
Wu
Labii Inc., USA
Email: yongganw@stanford.com, weasteam@gmail.com
Qualifications
2013 - 2015 Bioinformatics Specilist, Stanford University
& HHMI
2013 - 2013 Senior Bioinformatics Scientist, Ocean
Ridge Biosciences LLC
2011 - 2013 Bioinformatics Scientist, Ocean Ridge
Biosciences LLC
2009 - 2011 M.Sc., Biology(Bioinformatic Branch),
Texas Tech University
2006 - 2009 M.Sc., Microbiology(Bioinformatic
Branch), Wuhan Institute of Virology, Chinese Academic of Sciences
2002 - 2006 B.Sc., Biology, Yunnan University
Publications (Selected)
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West, K. A., Yin, X., Rutherford, E. M., Wee, B., Choi, J., Chrisman, B. S., ... & Iwai, S. (2022). Multi-angle meta-analysis of the gut microbiome in Autism Spectrum Disorder: a step toward understanding patient subgroups. Scientific Reports, 12(1), 17034.
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Yin, X., Altman, T., Rutherford, E., West, K. A., Wu, Y., Choi, J., ... & Iwai, S. (2020). A comparative evaluation of tools to predict metabolite profiles from microbiome sequencing data. Frontiers in microbiology, 11, 595910.
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Ma, H., Wu, Y., Niu, Q., Zhang, J., Jia, G., Manjunath, N., & Wu, H. (2016). A sliding-bulge structure at the Dicer processing site of pre-miRNAs regulates alternative Dicer processing to generate 5′-isomiRs. Heliyon, 2(9).
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Ma, H., Dang, Y., Wu, Y., Jia, G., Anaya, E., Zhang, J., ... & Wu, H. (2015). A CRISPR-based screen identifies genes essential for West-Nile-virus-induced cell death. Cell reports, 12(4), 673-683.
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Tang, S., Wu, Y., Ryan, C. N., Yu, S., Qin, G., Edwards, D. S., & Mayer, G. D. (2015). Distinct expression profiles of stress defense and DNA repair genes in Daphnia pulex exposed to cadmium, zinc, and quantum dots. Chemosphere, 120, 92-99.
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Barnette, D. N., VandeKopple, M., Wu, Y., Willoughby, D. A., & Lincoln, J. (2014). RNA-seq analysis to identify novel roles of scleraxis during embryonic mouse heart valve remodeling. PloS one, 9(7), e101425.
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Ma, H., Wu, Y., Dang, Y., Choi, J. G., Zhang, J., & Wu, H. (2014). Pol III promoters to express small RNAs: delineation of transcription initiation. Molecular therapy Nucleic acids, 3.
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Ma, H., Wu, Y., Choi, J. G., & Wu, H. (2013). Lower and upper stem–single-stranded RNA junctions together determine the Drosha cleavage site. Proceedings of the National Academy of Sciences, 110(51), 20687-20692.
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Wu, Y., Wei, B., Liu, H., Li, T., & Rayner, S. (2011). MiRPara: a SVM-based software tool for prediction of most probable microRNA coding regions in genome scale sequences. BMC bioinformatics, 12, 1-14.
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Pan, X. L., Liu, H., Wang, H. Y., Fu, S. H., Liu, H. Z., Zhang, H. L., ... & Liang, G. D. (2011). Emergence of genotype I of Japanese encephalitis virus as the dominant genotype in Asia. Journal of virology, 85(19), 9847-9853.
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Wu, Y., Wei, B., Liu, H., Han, N., & Rayner, S. (2010, December). MiRPara: A SVM-based software for prediction of mature miRNAs. In 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) (pp. 839-840). IEEE.
Profile Details
https://scholar.google.com/citations?user=2DQ-LWIAAAAJ&hl=en
https://www.linkedin.com/in/yongganwu/