Dr. Sanbo Qin
Institute of Molecular Biophysics
Florida StateUniversity, USA
Email: sqin@fsu.edu
Qualifications
2001-2006 Ph.D., Institute of Biophysics, Chinese Academy of Science, China
1997-2001 B.Sc., College
of life science, Sichuan
University, China
Publications (Selected)
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Qin, S. & Zhou, H.-X. Structural Models of Protein-DNA
Complexes Based on Interface Prediction and Docking. Current Protein &
Peptide Science 12, 531-539 (2011).
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Qin, S., Pang, X. & Zhou, H.X. Automated prediction of protein
association rate constants. Structure 19, 1744-1751 (2011).
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Pang, X., Qin, S. & Zhou, H.-X. Rationalizing 5000-Fold
Differences in Receptor-Binding Rate Constants of Four Cytokines. Biophysical
Journal 101, 1175-1183 (2011).
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Fleishman, S.J., et al. Community-Wide Assessment of
Protein-Interface Modeling Suggests Improvements to Design Methodology. J Mol
Biol (2011).
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Qin, S. & Zhou, H.-X. Selection of near-native poses in CAPRI rounds
13-19. Proteins-Structure Function and Bioinformatics 78, 3166-3173 (2010).
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Qin, S. & Zhou, H.-X. Generalized fundamental measure theory
for atomistic modeling of macromolecular crowding. Physical Review E 81 (2010).
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Qin, S., Minh, D.D.L., McCammon, J.A. & Zhou, H.-X. Method to
Predict Crowding Effects by Postprocessing Molecular Dynamics Trajectories:
Application to the Flap Dynamics of HIV-1 Protease. Journal of Physical
Chemistry Letters 1, 107-110 (2010).
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Dong, H., Qin, S. & Zhou, H.-X. Effects of Macromolecular
Crowding on Protein Conformational Changes. Plos Computational Biology 6 (2010).
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Qin, S. & Zhou, H.-X. Dissection of the high rate constant for
the binding of a ribotoxin to the ribosome. Proceedings of the NationalAcademy of
Sciences of the United States of America 106,
6974-6979 (2009).
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Qin, S. & Zhou, H.-X. Atomistic Modeling of Macromolecular
Crowding Predicts Modest Increases in Protein Folding and Binding Stability.
Biophysical Journal 97, 12-19 (2009).
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Batra, J., Xu, K., Qin, S. & Zhou, H.-X. Effect of
Macromolecular Crowding on Protein Binding Stability: Modest Stabilization and
Significant Biological Consequences. Biophysical Journal 97, 906-911 (2009).
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Qin, S. & Zhou, H.-X. Prediction of salt and mutational
effects on the association rate of U1A protein
and U1 small nuclear RNA stem/loop II. Journal of Physical Chemistry B 112,
5955-5960 (2008).
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He, Y., Qin, S. & Pan, X.-M. A novel procedure for
identification of the folding/unfolding patterns of dimeric proteins. Journal
of Theoretical Biology 250, 461-467 (2008).
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Zhou, H.-X. & Qin, S. Interaction-site prediction for protein
complexes: a critical assessment. Bioinformatics 23, 2203-2209 (2007).
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Tjong, H., Qin, S. & Zhou, H.-X. (PIPE)-P-2: protein
interface/interior prediction engine. Nucleic Acids Research 35, W357-W362
(2007).
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Qin, S. & Zhou, H.-X. meta-PPISP: a meta web server for
protein-protein interaction site prediction. Bioinformatics 23, 3386-3387
(2007).
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Qin, S. & Zhou, H.-X. Do electrostatic interactions
destabilize protein-nucleic acid binding? Biopolymers 86, 112-118 (2007).
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Qin, S. & Zhou, H.-X. A holistic approach to protein docking.
Proteins-Structure Function and Bioinformatics 69, 743-749 (2007).
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Tan, B., Qin, S., Chen, M.E., Cang, H.X. & Zhang, H.J. Ca2+
binding effects on the C2 domain conformation of human cytosolic phospholipase
A(2). Protein and Peptide Letters 13, 91-94 (2006).
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Pang, Y., Li, X., Qin, S., Zhang, H. & Chen, J. Mechanism of
inhibition of Ca+-transport activity of sarcoplasmic reticulum Ca2+-ATPase by
anisodamine. Indian Journal of Biochemistry & Biophysics 43, 351-359 (2006).
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Zhang, W.H., Qin, S., Zhang, H.J. & Zhu, Z.Y. Sequential
conformation changes of Chinese hamster ovary dihydrofolate reductase at its
active sites. Protein and Peptide Letters 12, 483-486 (2005).
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Qin, S., He, Y. & Pan, X.M. Predicting protein secondary
structure and solvent accessibility with an improved multiple linear regression
method. Proteins-Structure Function and Bioinformatics 61, 473-480 (2005).
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Xu, S., Oin, S. & Pan, X.M. Thermal and conformational
stability of Ssh10b protein from archaeon Sulfolobus shibattae. Biochemical
Journal 382, 433-440 (2004).
Profile Details
http://www.researchgate.net/profile/Sanbo_Qin/