[1]
|
D. Botstein and N. Risch, “Discovering Genotypes Underlying Human Phenotypes: Past Successes for Mendelian Disease, Future Approaches for Complex Disease,” Nature Genetics, Vol. 33, 2003, pp. 228-237.
http://dx.doi.org/10.1038/ng1090
|
[2]
|
F. S. Turner, D. R. Clutterbuck and C. Semple, “Pocus: Mining Genomic Sequence Annotation to Predict Disease Genes,” Genome Biology, Vol. 4, 2003, p. R75.
http://dx.doi.org/10.1186/gb-2003-4-11-r75
|
[3]
|
J. Chen, C. Shen and A. Sivachenko, “Mining Alzheimer Disease Relevant Proteins from Integrated Protein Interactome Data,” Pacific Symposium on Biocomputing, Vol. 11, 2006, pp. 367-378.
|
[4]
|
A. Hamosh, A. F. Scott, J. S. Amberger, C. A. Bocchini, and V. A. McKusick, “Online Mendelian Inheritance in Man (OMIM), a Knowledge-base of Human Genes and Genetic Disorders,” Nucleic Acids Research, Vol. 33, Database Issue, 2005.
|
[5]
|
E. Adie, R. R. Adams, K. L. Evans, D. J. Porteous and B. Pickard, “Speeding Disease Gene Discovery by Sequence Based Candidate Prioritization,” BMC Bioinformatics, Vol. 6, 2005, p. 55.
http://dx.doi.org/10.1186/1471-2105-6-55
|
[6]
|
L. Sam, Y. Liu, J. Li, C. Friedman and Y. A. Lussier, “Discovery of Protein Interaction Networks Shared by Diseases,” Pacific Symposium on Biocomputing, Vol. 12, 2007, pp. 76-87.
|
[7]
|
G. Jiminez-Sanchez, et al., ”Human Disease Genes,” Nature, Vol. 409, 2001, pp. 853-854
http://dx.doi.org/10.1038/35057050
|
[8]
|
M. Oti and H. G. Brunner, “The Modular Nature of Genetic Diseases,” Clinical Genetics, Vol. 71, 2007, pp. 1- 11. http://dx.doi.org/10.1111/j.1399-0004.2006.00708.x
|
[9]
|
J. H. Jing-Dong, “Understanding Biological Functions through Molecular Networks,” Cell Research, Vol. 18, 2008, pp. 224-237.
http://dx.doi.org/10.1111/j.1399-0004.2006.00708.x
|
[10]
|
J. Chen, B. Aronow and A. Jegga, “Disease Candidate Gene Identification and Prioritization Using Protein Interaction Networks,” BMC Bioinformatics, Vol. 10, No. 1, 2009, p. 73. http://dx.doi.org/10.1186/1471-2105-10-73
|
[11]
|
M. Oti, B. Snel, M. A. Huynen and H. G. Brunner, “Predicting Disease Genes Using Protein-Protein Interactions,” Journal of Medical Genetics, Vol. 43, 2006, pp. 691-698.
http://dx.doi.org/10.1136/jmg.2006.041376
|
[12]
|
S. Navlakha and C. Kingsford, “The Power of Protein Interaction Networks for Associating Genes with Diseases,” Bioinformatics, Vol. 26, 2010, pp. 1057-1063.
http://dx.doi.org/10.1093/bioinformatics/btq076
|
[13]
|
K. Lage, E. O. Karlberg, Z. M. Storling, P. I. Olason, A. G. Pedersen, O. Rigina, A. M. Hinsby, Z. Tumer, F. Pociot, N. Tommerup, Y. Moreau and S. Brunak, “A Human Phenome-Interactome Network of Protein Complexes Implicated in Genetic Disorders,” Nature Biotechnology, Vol. 25, 2007, pp. 309-316.
http://dx.doi.org/10.1038/nbt1295
|
[14]
|
X. B. Wu, R. Jiang, M. Q Zhang and S. Li, “Network-Based Global Inference of Human Disease Genes,” Molecular Systems Biology, Vol. 4, 2008, p. 189.
http://dx.doi.org/10.1038/msb.2008.27
|
[15]
|
S. Kohler, S. Bauer, D. Horn and P. N. Robinson, “Walking the Interactome for Prioritization of Candidate Disease Genes,” The American Journal of Human Genetics, Vol. 82, No. 4, 2008, pp. 949-958.
http://dx.doi.org/10.1016/j.ajhg.2008.02.013
|
[16]
|
Y. Li and J. C. Patra, “Genome-Wide Inferring Gene- Phenotype Relationship by Walking on the Heterogeneous Network,” Bioinformatics, Vol. 26, No. 9, 2010, pp. 1219-1224.
http://dx.doi.org/10.1093/bioinformatics/btq108
|
[17]
|
S. Erten and M. Koyut¨urk, “Role of Centrality in Network-Based Prioritization of Disease Genes,” Proceedings of the 8th European Conf. Evolutionary Computation, Machine Learning, and Data Mining in Bioinformatics (EVOBIO’10), Vol. LNCS 6023, 2010, pp. 13-25.
|
[18]
|
A. M. Edwards, B. Kus, R. Jansen, D. Greenbaum, J. Greenblatt and M. Gerstein, “Bridging Structural Biology and Genomics: Assessing Protein Interaction Data with Known Complexes,” Trends in Genetics, Vol. 18, No. 10, 2002, pp. 529-536.
http://dx.doi.org/10.1016/S0168-9525(02)02763-4
|
[19]
|
Online Mendelian Inheritance in Man, OMIM®. McKusick-Nathans Institute of Genetic Medicine, Johns Hop-kins University (Baltimore, MD), World Wide Web URL: http://omim.org/
|
[20]
|
M. A. van Driel, J. Bruggeman, G. Vriend, et al., ”A Text-Mining Analysis of the Human Phenome,” European Journal of Human Genetics, Vol. 14, 2006, pp. 535-542.
http://dx.doi.org/10.1038/sj.ejhg.5201585
|
[21]
|
D. Szklarczyk, A. Franceschini, M. Kuhn, M. Simonovic, A. Roth, P. Minguez, T. Doerks, M. Stark, J. Muller, P. Bork, et al., “The STRING Database in 2011: Functional Interaction Networks of Proteins, Globally Integrated and Scored,” Nucleic Acids Research, Vol. 39, 2011, pp. D561-D568. http://dx.doi.org/10.1093/nar/gkq973
|
[22]
|
E. Birney, D. Andrews, M. Caccamo, Y. Chen, L. Clarke, G. Coates, T. Cox, F. Cunningham, V. Curwen, T. Cutts, et al., “Ensembl 2006,” Nucleic Acids Research, Vol. 34, 2006, pp. D556-D561.
http://dx.doi.org/10.1093/nar/gkj133
|
[23]
|
U. Mudunuri, A. Che, M. Yi and R. M. Stephens, “bio-DBnet: The Biological Database Network,” Bioinformatics, Vol. 25, No. 4, 2009, pp. 555-556.
http://dx.doi.org/10.1093/bioinformatics/btn654
|