[1]
|
Que, Q., Chilton, M.D., de Fontes, C.M., He, C., Nuccio, M., Zhu, T., Wu, Y., Chen, J.S. and Shi, L. (2010) Trait Stacking in Transgenic Crops: Challenges and Opportunities. GM Crops, 4, 220-229. https://doi.org/10.4161/gmcr.1.4.13439
|
[2]
|
Mette, M.F. and Houben, A. (2015) Engineering of Plant Chromosomes. Chromosome Research, 23, 69-76. https://doi.org/10.1007/s10577-014-9449-1
|
[3]
|
Srivastava, V. and Ow, D.W. (2001) Single Copy Primary Transformants of Maize Obtained through the Co-Introduction of a Recombinase-Expressing Construct. Plant Molecular Biology, 46, 561-566. https://doi.org/10.1023/A:1010646100261
|
[4]
|
Ow, D.W. (2011) Recombinase-Mediated Gene Stacking as a Transformation Operating System. Journal of Integrative Plant Biology, 53, 512-519.
https://doi.org/10.1111/j.1744-7909.2011.01061.x
|
[5]
|
Perez-Pinera, P., Ousterout, D.G. and Gersbach, C.A. (2012) Advances in Targeted Genome Editing. Current Opinion in Chemical Biology, 16, 268-277.
https://doi.org/10.1016/j.cbpa.2012.06.007
|
[6]
|
Belhaj, K., Chaparro-Garcia, B.A., Kamoun, S. and Nekrasov, V. (2013) Plant Genome Editing Made Easy: Targeted Mutagenesis in Model and Crop Plants Using the CRISPR/Cas System. Plant Methods, 9, 39.
https://doi.org/10.1186/1746-4811-9-39
|
[7]
|
Puchta, H. and Fauser, F. (2013) Gene Targeting in Plants: 25 Years Later. The International Journal of Developmental Biology, 57, 629-637.
https://doi.org/10.1387/ijdb.130194hp
|
[8]
|
Sauer, B. (1987) Functional Expression of the Cre-Lox Site Specific Recombination System in the Yeast Saccharomyces cerevisiae. Molecular and Cellular Biology, 7, 2087-2096. https://doi.org/10.1128/MCB.7.6.2087
|
[9]
|
Bucholtz, F. (2008) Principles of Site-Specific Recombinase (SSR) Technology. Journal of Visualized Experiments, 15, e718. https://doi.org/10.3791/718
|
[10]
|
Ghosh, P., Pannunzio, N.R. and Hatfull, G.F. (2005) Synapsis in Phage Bxb1 Integration: Selection Mechanism for the Correct Pair of Recombination Sites. Journal of Molecular Biology, 349, 331-348. https://doi.org/10.1016/j.jmb.2005.03.043
|
[11]
|
Pallavi, G., Pannunzio, N.R. and Hatfull, G.F. (2005) Synapsis in Phage Bxb1 Integration: Selection Mechanism for the Correct Pair of Recombination Sites. Journal of Molecular Biology, 349, 331-348. https://doi.org/10.1016/j.jmb.2005.03.043
|
[12]
|
Calos, M.P. (2006) The phiC31 Integrase System for Gene Therapy. Current Gene Therapy, 6, 633-645. https://doi.org/10.2174/156652306779010642
|
[13]
|
Vesna, D., Lenderts, B., Bidney, D. and Lyznik, L.A. (2008) A Cre::FLP Fusion Protein Recombines FRT or LoxP Sites in Transgenic Maize Plants. Plant Biotechnology Journal, 6, 770-781. https://doi.org/10.1111/j.1467-7652.2008.00357.x
|
[14]
|
Birling, M.C., Gofflot, F. and Warot, X. (2009) Site-Specific Recombinases for Manipulation of the Mouse Genome. Methods in Molecular Biology, 561, 245-263.
https://doi.org/10.1007/978-1-60327-019-9_16
|
[15]
|
Allen, B.G. and Weeks, D.L. (2009) Bacteriophage C31 Integrase Mediated Transgenesis in Xenopus laevis for Protein Expression at Endogenous Levels. Methods in Molecular Biology, 518, 113-122. https://doi.org/10.1007/978-1-59745-202-1_9
|
[16]
|
Fladung, M. and Becker, D. (2009) Targeted Integration and Removal of Transgenes in Hybrid Aspen (Populus tremula L. × P. tremuloides Michx.) Using Site-Specific Recombination Systems. Plant Biology, 13, 334-340.
https://doi.org/10.1111/j.1438-8677.2010.00419.x
|
[17]
|
Wang, Y., Yau, Y.Y., Perkins-Balding, D. and Thomsan, J.G. (2010) Recombinase Technology: Applications and Possibilities. Plant Cell Reports, 30, 267-285.
https://doi.org/10.1007/s00299-010-0938-1
|
[18]
|
Araki, K., Okada, Y., Araki, M. and Yamamura, K. (2010) Comparative Analysis of Right Element Mutant lox Sites on Recombination Efficiency in Embryonic Stem Cells. BMC Biotechnology, 10, 29. https://doi.org/10.1186/1472-6750-10-29
|
[19]
|
Esvelt, K.M. and Wang, H.H. (2012) Genome-Scale Engineering for Systems and Synthetic Biology. Molecular Systems Biology, 9, 641.
https://doi.org/10.1038/msb.2012.66
|
[20]
|
Zhang, Y., Bucholtz, F., Muyrers, J.P. and Stewart, A.F. (1998) A New Logic for DNA Engineering Using Recombination in Escherichia coli. Nature Genetics, 2, 123-128. https://doi.org/10.1038/2417
|
[21]
|
Datsenko, K.A. and Wanner, B.L. (2000) One-Step Inactivation of Chromosomal Genes in Escherichia coli. K-12 Using PCR Products. Proceedings of the National Academy of Sciences of the United States of America, 97, 6640-6645.
https://doi.org/10.1073/pnas.120163297
|
[22]
|
Yu, D., Ellis, H.M., Lee, E., Jenkins, N.A., Copeland, N.G. and Court, D.L. (2000) An Efficient Recombination System for Chromosome Engineering in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America, 97, 5978-5983. https://doi.org/10.1073/pnas.100127597
|
[23]
|
Nandy, S., Zhao, S., Pathak, B.P., Manoharan, M. and Srivastava, V. (2015) Gene Stacking in Plant Cell Using Recombinases for Gene Integration and Nucleases for Marker Gene Deletion. BMC Biotechnology, 15, 93.
https://doi.org/10.1186/s12896-015-0212-2
|
[24]
|
Maeder, M.L., Beganny, S.T., Osiak, A., Wright, D.A., Anthony, R.M., Eichtinger, M., Jianq, T., Foley, J.E., Winfrey, R.J., Townsend, J.A., Wallace, E.U., Sander, J.D., Lerch, F.M., Fu, F., Pearlberg, J., Gobel, C., Dassie, J.P., Miller, S.M.P., Porteus, M.H., Sqroi, D.C., Iafrate, A.J., Dobbs, D., Jr., P.B.M., Cathomen, T., Voytas, D.F. and Joung, J.K. (2008) Rapid “Open-Source” Engineering of Customized Zinc-Finger Nucleases for Highly Efficient Gene Modification. Molecular Cell, 31, 294-301.
https://doi.org/10.1016/j.molcel.2008.06.016
|
[25]
|
Ramirez, C.L., Foley, J.E., Wright, D.A., Lerch, F.M., Rahman, S.H., Cornu, T.I., Winfrey, R.J., Sander, J.D., Fu, F., Townsend, J.A., Cathomen, T., Voytas, D.F. and Joung, J.K. (2008) Unexpected Failure Rates for Modular Assembly of Engineered Zinc Fingers. Nature Methods, 5, 374-375. https://doi.org/10.1038/nmeth0508-374
|
[26]
|
Kim, Y.G., Cha, J. and Chandrasegaran, S. (1996) Hybrid Restriction Enzymes: Zinc Finger Fusions to Fok I Cleavage Domain. Proceedings of the National Academy of Sciences of the United States of America, 93, 1156-1160.
https://doi.org/10.1073/pnas.93.3.1156
|
[27]
|
Bitnaite, J., Wah, D.A., Aggarwal, A.K. and Schildkraut, I. (1998) Fok I Dimerization Is Required for DNA Cleavage. Proceedings of the National Academy of Sciences of the United States of America, 95, 10570-10575.
https://doi.org/10.1073/pnas.95.18.10570
|
[28]
|
Cathomen, T. and Joung, J.K. (2008) Zinc-Finger Nucleases: The Next Generation Emerges. Molecular Therapy, 16, 1200-1207. https://doi.org/10.1038/mt.2008.114
|
[29]
|
Ekker, S.C. (2008) Zinc Finger-Based Knockout Punches for Zebrafish Genes. Zebrafish, 5, 121-123. https://doi.org/10.1089/zeb.2008.9988
|
[30]
|
Kim, S. and Kim, J. (2011) Targeted Genome Engineering via Zinc Finger Nucleases. Plant Biotechnology Reports, 5, 9-17. https://doi.org/10.1007/s11816-010-0161-0
|
[31]
|
Gaj, T., Gersbach, C.A. and Barbas, C.F. (2013) ZFN, TALEN and CRISPR/Cas-Based Methods for Genome Engineering. Trends in Biotechnology, 31, 397-405.
https://doi.org/10.1016/j.tibtech.2013.04.004
|
[32]
|
Gonzalez, B., Schwimmer, L.J., Fuller, R.P., Ye, Y., Asawapornmongkol, L. and Barbas, C.F. (2010) Modular System for the Construction of Zinc Finger Libraries and Proteins. Nature Protocols, 5, 791-810. https://doi.org/10.1038/nprot.2010.34
|
[33]
|
Chen, W., Qian, Y., Wu, X., Sun, Y., Wu, X. and Cheng, X. (2014) Inhibiting Replication of Begomoviruses Using Artificial Zinc Finger Nucleases That Target Viral Conserved Nucleotide Motif. Virus Genes, 48, 494-501.
https://doi.org/10.1007/s11262-014-1041-4
|
[34]
|
Beerli, R.R. and Barbas, C.F. (2002) Engineering Polydactyl Zinc-Finger Transcription Factors. Nature Biotechnology, 20, 135-141.
https://doi.org/10.1038/nbt0202-135
|
[35]
|
Zhang, F., Maeder, M.L., Unger-Wallace, E., Hoshaw, J.P., Royon, D., Christian, M., Li, X., Pierick, C.J., Dobbs, D., Peterson, T., Joung, J.K. and Voytas, F.D. (2010) High Frequency Targeted Mutagenesis in Arabidopsis thaliana Using Zinc Finger Nucleases. Proceedings of the National Academy of Sciences of the United States of America, 107, 12028-12033. https://doi.org/10.1073/pnas.0914991107
|
[36]
|
Sprink, T., Metje, J. and Hartung, F. (2015) Plant Genome Editing by Novel Tools: TALEN and Other Sequence Specific Nucleases. Current Opinion in Biotechnology, 32, 47-53. https://doi.org/10.1016/j.copbio.2014.11.010
|
[37]
|
Boch, J., Scholze, H., Schornack, S., Landqarf, A., Hahn, S., Kay, S., Lahaye, T., Nickstadt, A. and Bonas, U. (2009) Breaking the Code of DNA Binding Specificity of TAL-Type III Effectors. Science, 326, 1509-1512.
https://doi.org/10.1126/science.1178811
|
[38]
|
Mercer, A.C., Gaj, T., Fuller, R.P. and Barbas, C.F. (2012) Chimeric TALE Recombinases with Programmable DNA Sequence Specificity. Nucleic Acids Research, 40, 11163-11172. https://doi.org/10.1093/nar/gks875
|
[39]
|
Joung, J.K. and Sander, J.D. (2013) TALENs: A Widely Applicable Technology for Targeted Genome Editing. Molecular and Cellular Biology, 14, 49-55.
https://doi.org/10.1038/nrm3486
|
[40]
|
Van der Oost, J., Westra, E.R., Jackson, R.N. and Wiedenheft, B. (2014) Unravelling the Structural and Mechanistic Basis of CRISPR-Cas Systems. Nature Reviews Microbiology, 12, 479-492. https://doi.org/10.1038/nrmicro3279
|
[41]
|
Sorek, R., Kunin, V. and Huqenholtz, P. (2008) CRISPR-A Widespread System That Provides Acquired Resistance against Phages in Bacteria and Archaea. Nature Reviews Microbiology, 6, 181-186. https://doi.org/10.1038/nrmicro1793
|
[42]
|
Horvath, P. and Barrangou, R. (2010) CRISPR/Cas, the Immune System of Bacteria and Archaea. Science, 327, 167-170. https://doi.org/10.1126/science.1179555
|
[43]
|
Jore, M.M., Lundgran, M., Duijn, E., Bultema, J.B., Westra, E.R., Waghmare, S.P., Wiedenheft, B., Pul, U., Wurm, R., Wagner, R., Beijer, M.R., Barendregt, A., Zhou, K., Snijders, A.P.L., Dickman, M.J., Doudna, J.A., Boekema, E.J., Heck, A.J.R., Van der Oost, J. and Bronus, S.J.J. (2011) Structural Basis for CRISPR RNA-Guided DNA Recognition by Cascade. Nature Structural & Molecular Biology, 18, 529-536.
https://doi.org/10.1038/nsmb.2019
|
[44]
|
Li, J., Zhang, D. and Sheen, J. (2014) Cas9-Based Genome Editing in Arabidopsis and Tobacco. Methods in Enzymology, 546, 459-472.
https://doi.org/10.1016/B978-0-12-801185-0.00022-2
|
[45]
|
Yang, L., Grishin, D., Wang, G., Aach, J., Zhang, C.Z., Chari, R., Homsy, J., Cai, X., Zhao, Y., Fan, J.B., Seidman, C., Seidman, J., Pu, W. and Church, G. (2014) Targeted and Genome-Wide Sequencing Reveal Single Nucleotide Variations Impacting Specificity of Cas9 in Human Stem Cells. Nature Communications, 5, Article No. 5507. https://doi.org/10.1038/ncomms6507
|
[46]
|
Rajendran, S.R., Yau, Y.Y., Pandey, D. and Kuar, A. (2015) CRISPR-Cas9 Based Genome Engineering: Opportunities in Agri-Food-Nutrition and Healthcare. OMICS, 19, 261-275. https://doi.org/10.1089/omi.2015.0023
|
[47]
|
Hilton, I.B., D’Ippolito, A.M., Vockley, C.M., Thakore, P.I., Crawford, G.E., Reddy, T.E. and Gersbach, C.A. (2015) Epigenome Editing by a CRISPR-Cas9-Based Acetyltransferase Activates Genes from Promoters and Enhancers. Nature Biotechnology, 30, 510-517. https://doi.org/10.1038/nbt.3199
|
[48]
|
Woo J.W., Kim, J., Kwon, S.I., Corvalan, C., Cho, S.W., Kim, H., Kim, S.G., Kim, S.T., Choe, S. and Kim, J.S. (2015) DNA-Free Genome Editing in Plants with Preassembled CRISPR-Cas9 Ribonucleoproteins. Nature Biotechnology, 33, 1162-1164.
https://doi.org/10.1038/nbt.3389
|
[49]
|
Zhang, Y., Liang, Z., Zong, Y., Wang, Y., Liu, J., Chen, K., Qiu, J. and Gao, C. (2016) Efficient and Transgene-Free Genome Editing in Wheat through Transient Expression of CRISPR/Cas9 DNA or RNA. Nature Communications, 7, Article No. 12617.
https://doi.org/10.1038/ncomms12617
|
[50]
|
Ow, D.W. (2016) The Long Road to Recombinase-Mediated Plant Transformation. Plant Biotechnology Journal, 14, 441-447. https://doi.org/10.1111/pbi.12472
|
[51]
|
Taverniers, I., Papazova, N., Bertheau, Y., Loose, M.D. and Jensen, A.H. (2008) Gene Stacking in Transgenic Plants: Towards Compliance between Definitions, Terminology, and Detection within the EU Regulatory Framework. Environmental Biosafety Research, 7, 197-218. https://doi.org/10.1051/ebr:2008018
|
[52]
|
Halpin, C. (2005) Gene Stacking in Transgenic Plants—The Challenge for 21st Century Plant Biotechnology. Plant Biotechnology Journal, 3, 141-155.
https://doi.org/10.1111/j.1467-7652.2004.00113.x
|
[53]
|
D’Halluin, K., Vanderstraeten, C., Van-Hulle, J., Rosolowska, J., Van-De-Brande, I., Pennewaert, A., D’Hont, K., Bossut, M., Jantz, D., Ruiter, R. and Broadhvest, J. (2013) Targeted Molecular Trait Stacking in Cotton through Targeted Double-Strand Break Induction. Plant Biotechnology Journal, 11, 933-941.
https://doi.org/10.1111/pbi.12085
|
[54]
|
Agapito-Tenfen, S.Z., Vilperte, V., Benevenuto, R.F., Rover, C.M., Traavik, T.I. and Nodari, R.O. (2014) Effect of Stacking Insecticidal Cry and Herbicide Tolerance Epsps Transgenes on Transgenic Maize Proteome. BMC Plant Biology, 4, 346-348.
https://doi.org/10.1186/s12870-014-0346-8
|
[55]
|
Hou, L., Yau, Y., Wei, J., Han, Z., Dong, Z. and Ow, D.W. (2014) An Open-Source System for in Planta Gene Stacking by Bxb1 and Cre Recombinases. Molecular Plant, 7, 1756-1765. https://doi.org/10.1093/mp/ssu107
|
[56]
|
Carroll, D. (2008) Zinc-Finger Nucleases as Gene Therapy Agents. Gene Therapy, 15, 1463-1468. https://doi.org/10.1038/gt.2008.145
|
[57]
|
Shukla, V.K., Doyon, Y. and Miller, J.C. (2009) Precise Genome Modification in the Crop Species Zea mays Using Zinc-Finger Nucleases. Nature, 459, 437-441.
https://doi.org/10.1038/nature07992
|
[58]
|
Cai C.Q., Doyon, Y., Miller, W.M., Dekelver, J.C., Moehle, R.C., Rock, E.A., Lee, J.M., Garrison, Y.L., Schulenberg, R., Blue, L., Worden, R., Baker, A., Faraji, L., Zhang, F., Holmes, L., Rebar, M.C., Collingwood, E.J., Rubin-Wilson, T.N., Gregory, B., Urnov, P.D. and Petolino, F.D. (2008) Targeted Transgene Integration in Plant Cells Using Designed Zinc Finger Nucleases. Plant Molecular Biology, 69, 699-709. https://doi.org/10.1007/s11103-008-9449-7
|
[59]
|
Townsend, J.A., Wright, D.A., Winfrey, R.J., Fu, F., Maeder, M.L., Joung, J.K. and Voytas, D.F. (2009) High-Frequency Modification of Plant Genes Using Engineered Zinc-Finger Nucleases. Nature, 459, 442-445. https://doi.org/10.1038/nature07845
|
[60]
|
Geurts, A.M., Cost, G.J., Freyvert, Y., Zeitler, B., Miller, J.C., Choi, V.M., Jenkins, S.S., Wood, A., Cui, X., Meng, X., Vincent, A., Lam, S., Michalkiewicz, M., Schilling, R., Foeckler, J., Kalloway, S., Weiler, H., Menoret, S., Anegon, I., Davis, G.D., Zhang, L., Rebar, E.J., Gregory, P.D., Urnov, F.D., Jacob, H.J. and Buelow, R. (2009) Knockout Rats via Embryo Microinjection of Zinc-Finger Nucleases. Science, 325, 433-433. https://doi.org/10.1126/science.1172447
|
[61]
|
Ochiai, H., Fujita, K., Suzuki, K.I., Nishikawa, M., Shibata, T., Sakamoto, N. and Yamamoto, T. (2010) Targeted Mutagenesis in the Sea Urchin Embryo Using Zinc-Finger Nucleases. Genes Cells, 15, 875-885.
https://doi.org/10.1111/j.1365-2443.2010.01425.x
|
[62]
|
Takasu, Y., Kobayashi, I., Beumer, K., Uchino, K., Sezutsu, H., Sajwan, S., Carroll, D., Tamura, T. and Zurovec, M. (2010) Targeted Mutagenesis in the Silkworm Bombyx mori Using Zinc Finger Nuclease mRNA Injection. Insect Biochemistry and Molecular Biology, 40, 759-765. https://doi.org/10.1016/j.ibmb.2010.07.012
|
[63]
|
Osakabe, K., Osakabe, Y. and Toki, S. (2010) Site-Directed Mutagenesis in Arabidopsis Using Custom-Designed Zinc Finger Nucleases. Proceedings of the National Academy of Sciences of the United States of America, 107, 12034-12039.
https://doi.org/10.1073/pnas.1000234107
|
[64]
|
Goldberg, A.D., Banaszynski, L.A., Noh, K.M., Lewis, P.W., Elsaesser, S.J., Stadler, S., Dewell, S., Law, M., Guo, X., Li, X., Wen, D., Chapgier, A., Dekelver, R.C., Miller, J.C., Lee, Y.L., Boydston, E.A., Holmes, M.C., Gregory, P.D., Greally, J.M., Rafii, S., Yang, C., Scambler, P.J., Garrick, D., Gibbons, R.J., Higgs, D.R., Cristea, I.M., Urnov, F.D., Zheng, D. and Allis, C.D. (2010) Distinct Factors Control Histone Variant H3.3 Localization at Specific Genomic Regions. Cell, 140, 678-691.
https://doi.org/10.1016/j.cell.2010.01.003
|
[65]
|
Curtin, S.J., Zhang, F., Sander, J.D., Haun, W.J., Starker, C., Baltes, N.J., Reyon, D., Dahlborg, E.J., Goodwin, M.J., Coffman, A.P., Dobbs, D., Joung, J.K., Voytas, D.F. and Stupar, R.M. (2011) Targeted Mutagenesis of Duplicated Genes in Soybean with Zinc-Finger Nucleases. Plant Physiology, 156, 466-473.
https://doi.org/10.1104/pp.111.172981
|
[66]
|
Young J.J., Cherone, J.M., Doyon, Y., Ankoudinova, I., Faraji, F.M., Lee, A.H., Ngo, C., Guschin, D.Y., Paschon, D.E., Miller, J.C., Zhang, L., Rebar, E.J., Gregory, P.D., Urnov, F.D., Harland, R.M. and Zeitler, B. (2011) Efficient Targeted Gene Disruption in the Somatic and Germ Line of the Frog (Xenopus tropicalis) Using Engineered Zinc-Finger Nucleases. Proceedings of the National Academy of Sciences of the United States of America, 108, 7052-7057.
https://doi.org/10.1073/pnas.1102030108
|
[67]
|
Flisikowska, T., Thorey, I.S., Offner, S., Ros, F., Lifke, V., Zeitler, B., Rottmann, O., Vincent, A., Zhang, L., Jenkins, S., Niersbach, H., Kind, A.J., Gregory, P.D., Schnieke, A.E. and Platzer, J. (2011) Efficient Immunoglobulin Gene Disruption and Targeted Replacement in Rabbit Using Zinc Finger Nucleases. PLoS ONE, 6, e21045. https://doi.org/10.1371/journal.pone.0021045
|
[68]
|
Hauschild, J., Petersen, B., Santiago, Y., Queisser, A.L., Carnwath, J.W., Lucas-Hahn, A., Zhang, L., Meng, X., Gregory, P.D., Schwinzer, R., Cost, G.J. and Niemann, H. (2011) Efficient Generation of a Biallelic Knockout in Pigs Using Zinc-Finger Nucleases. Proceedings of the National Academy of Sciences of the United States of America, 108, 12013-12017.
https://doi.org/10.1073/pnas.1106422108
|
[69]
|
Li, H., Haurigot, V., Doyon, Y., Li, T., Wong, S.Y., Bhagwat, A.S., Malani, N., Anguela, X.M., Sharma, R., Ivanciu, L., Murphy, S.L., Finn, J.D., Khazi, F.R., Zhou, S., Paschon, D.E., Rebar, E.J., Bushman, F.D., Gregory, P.D., Holmes, M.C. and High, K.A. (2011) In Vivo Genome Editing Restores Haemostasis in a Mouse Model of Haemophilia. Nature, 475, 217-221. https://doi.org/10.1038/nature10177
|
[70]
|
Yu, S., Luo, J., Song, Z., Ding, F., Dai, Y. and Li, N. (2011) Highly Efficient Modification of Beta-Lactoglobulin (BLG) Gene via Zinc-Finger Nucleases in Cattle. Cell Research, 21, 1638-1640. https://doi.org/10.1038/cr.2011.153
|
[71]
|
Wood, A.J., Lo, T.W., Zeitler, B., Pickle, C.S., Ralston, E.J., Lee, A.H., Amora, R., Miller, J.C., Leung, E., Meng, X., Zhang, L., Rebar, E.J., Gregory, P.D., Urnov, F.D. and Meyer, B.J. (2011) Targeted Genome Editing across Species Using ZFNs and TALENs. Science, 333, 307. https://doi.org/10.1126/science.1207773
|
[72]
|
Tebas P., Stein, D., Frank, T.L., Wang, S.Q., Lee, G., Spratt, S.K., Surosky, R.T., Giedlin, M.A., Nichol, G., Holmes, M.C., Gregory, D.P., Ando, D.G., Kalos, M., Collman, R.G., Binder-Scholl, G., Plesa, G., Hwang, W., Bruce, L.L. and Carl, J.H. (2014) Gene Editing of CCR5 in Autologous CD4 T Cells of Persons Infected with HIV. The New England Journal of Medicine, 370, 901-910.
https://doi.org/10.1056/NEJMoa1300662
|
[73]
|
Hockemeyer, D., Wang, H., Kiani, S., Lai, C.S., Gao, Q., Cassady, J.P., Cost, G.J., Zhang, L., Santiago, Y., Miller, J.C., Zeitler, B., Cherone, J.M., Meng, X., Hinkley, S.J., Rebar, E.J., Gregory, P.D., Urnov, F.D. and Jaenisch, R. (2011) Genetic Engineering of Human Pluripotent Cells Using TALE Nucleases. Nature Biotechnology, 29, 731-734. https://doi.org/10.1038/nbt.1927
|
[74]
|
Tesson, L., Usal, C., Ménoret, S.V., Leung, E., Niles, B.J., Remy, S.V., Santiago, Y., Vincent, A., Meng, X., Zhang, L., Gregory, P.D., Anegon, I. and Cost, G.J. (2011) Knockout Rats Generated by Embryo Microinjection of TALENs. Nature Biotechnology, 29, 695-696. https://doi.org/10.1038/nbt.1940
|
[75]
|
Huang, P., Xiao, A., Zhou, M., Zhu, Z., Lin, S. and Zhang, B. (2011) Heritable Gene Targeting in Zebrafish Using Customized TALENs. Nature Biotechnology, 29, 699-700. https://doi.org/10.1038/nbt.1939
|
[76]
|
Sander, J.D., Cade, L., Khayter, C., Reyon, D., Peterson, R.T., Joung, J.K. and Yeh, J.J. (2011) Targeted Gene Disruption in Somatic Zebrafish Cells Using Engineered TALENs. Nature Biotechnology, 29, 697-698. https://doi.org/10.1038/nbt.1934
|
[77]
|
Davies, B., Davies, G., Preece, C., Puliyadi, R., Szumska, D. and Bhattacharya, S. (2013) Site Specific Mutation of the Zic2 Locus by Microinjection of TALEN mRNA in Mouse CD1, C3H and C57BL/6J Oocytes. PLoS ONE, 8, 60216.
https://doi.org/10.1371/journal.pone.0060216
|
[78]
|
Zhang, Y., Zhang, F., Li, X., Baller, J.A., Qi, Y., Starker, C.G., Bogdanove, A.J. and Voytas, D.F. (2013) Transcription Activator-Like Effector Nucleases Enable Efficient Plant Genome Engineering. Plant Physiology, 161, 20-27.
https://doi.org/10.1104/pp.112.205179
|
[79]
|
Dupuy, A., Valton, J., Leduc, S., Armier, J., Galetto, R., Gouble, A., Lebuhotel, C., Stary, A., Paques, F., Duchateau, P., Sarasin, A. and Daboussi, F. (2013) Targeted Gene Therapy of Xeroderma pigmentosum Cells Using Meganuclease and TALENTM. PLoS ONE, 8, e78678. https://doi.org/10.1371/journal.pone.0078678
|
[80]
|
Haun, W., Coffman, A., Clasen, B.M., Demorest, Z.L., Lowy, A., Ray, E., Retterath, A., Stoddard, T., Juillerat, A., Cedrone, F., Mathis, L., Voytas, D.F. and Zhang, F. (2014) Improved Soybean Oil Quality by Targeted Mutagenesis of the Fatty Acid Desaturase 2 Gene Family. Plant Biotechnology Journal, 12, 934-940.
https://doi.org/10.1111/pbi.12201
|
[81]
|
Ponce de Leon, V., Merrialt, A., Tesson, L., Anegon, I. and Hummler, E. (2014) Generation of TALE-Mediated GRdim Knock-In Rats by Homologous Recombination. PLoS ONE, 9, e88146. https://doi.org/10.1371/journal.pone.0088146
|
[82]
|
Daboussi, F., Leduc, S., Maréchal, A., Dubois, G., Guyot, V., Perez-Michaut, C., Amato, A., Falciatore, A., Juillerat, A., Beurdeley, M., Voytas, D.F., Cavarec, L. and Duchateau, P. (2014) Genome Engineering Empowers the Diatom Phaeodactylum tricornutum for Biotechnology. Nature Communications, 5, Article No. 3831.
https://doi.org/10.1038/ncomms4831
|
[83]
|
Wienert, B., Funnell, A.P.W., Norton, L.J., Pearson, R.C.M., Wilkinson-White, L.E., Lester, K., Vadolas, J., Porteus, M.H., Matthews, J.M., Quinlan, K.G.R. and Crossley, M. (2015) Editing the Genome to Introduce a Beneficial Naturally Occurring Mutation Associated with Increased Fetal Globin. Nature Communications, 6, Article No. 7085. https://doi.org/10.1038/ncomms8085
|
[84]
|
Wu, H., Wang, Y., Zhang, Y., Yang, M., Lv, J., Liu, J. and Zhang, Y. (2015) TALE Nickase-Mediated SP110 Knocking Endows Cattle with Increased Resistance to Tuberculosis. Proceedings of the National Academy of Sciences of the United States of America, 112, 1530-1539. https://doi.org/10.1073/pnas.1421587112
|
[85]
|
Valton, J., Guyot, V., Marechal, A., Filhol, J.M., Juillerat, A., Duclert, A., Duchateau, P. and Poirot, L. (2015) A Multidrug-Resistant Engineered CAR T Cell for Allogeneic Combination Immunotherapy. Molecular Therapy, 23, 1507-1518.
https://doi.org/10.1038/mt.2015.104
|
[86]
|
Poirot, L., Philip, B., Schiffer-Mannioui, C., Diane, C.L., Chion-Sotinel, I., Derniame, S., Bas, C., Potrel, P. and Lemaire, L. (2015) Multiplex Genome Edited T-Cell Manufacturing Platform for “Off-the-Shelf” Adoptive T-Cell Immunotherapies. Cancer Research, 75, 3321. https://doi.org/10.1158/0008-5472.CAN-14-3321
|
[87]
|
Valletta, S., Dolatshad, H., Bartenstein, M., Yip, B.H., Bello, E., Gordon, S., Yu, Y., Shaw, J., Roy, S., Scifo, L., Schuh, A., Pellagatti, A., Fulga, T.A., Verma, A. and Boultwood, J. (2015) ASXL1 Mutation Correction by CRISPR/Cas9 Restores Gene Function in Leukemia Cells and Increases Survival in Mouse Xenografts. Oncotarget, 6, 44061-4407. https://doi.org/10.18632/oncotarget.6392
|
[88]
|
Weber, J., Ollinger, R., Friedrich, M., Ehmer, U., Barenboim, M., Steiger, K., Heid, I., Mueller, S., Maresch, R., Engleitner, T., Gross, N., Geumann, U., Fu, B., Segler, A., Yuan, D., Lange, S., Strong, A., de la Rosa, J., Esposito, I., Liu, P., Cadinanos, J., Vassiliou, G.S., Schmid, R.M., Schneider, G., Unger, K., Yang, F., Braren, R., Heikenwalder, M., Varela, I., Saur, D., Bradley, A. and Rad, R. (2015) CRISPR/Cas9 Somatic Multiplex-Mutagenesis for High-Throughput Functional Cancer Genomics in Mice. Proceedings of the National Academy of Sciences of the United States of America USA, 112, 13982-13987. https://doi.org/10.1073/pnas.1512392112
|
[89]
|
Firth, A.L., Menon, T., Parker, G.S., Qullas, S.J., Lewis, B.M., Ke, E., Dargitz, C.T., Wright, R., Khanna, A., Gage, F.H. and Verma, I.M. (2015) Functional Gene Correction for Cystic Fibrosis in Lung Epithelial Cells Generated from Patient iPSCs. Cell Reports, 12, 1385-1390. https://doi.org/10.1016/j.celrep.2015.07.062
|
[90]
|
Wu, Y., Liang, D., Wang, Y., Bai, M., Tang, W., Bao, S., Yan, Z., Li, D. and Li, J. (2013) Correction of a Genetic Disease in Mouse via Use of CRISPR-Cas9. Cell Stem Cell, 13, 659-662. https://doi.org/10.1016/j.stem.2013.10.016
|
[91]
|
Long, C., McAnally, J.R., Shelton, J.M., Mireault, A.A., Bassel-Duby, R. and Olson, E.N. (2014) Prevention of Muscular Dystrophy in Mice by CRISPR/Cas9-Mediated Editing of Germline DNA. Science, 345, 1184-1188.
https://doi.org/10.1126/science.1254445
|
[92]
|
Osborn, M.J., Gabriel, R., Webber, B.R., DeFeo, A.P., McElory, A.N., Jarjour, J., Starker, C.G., Wagner, J.E., Joung, J.K., Voytas, D.F., Von, C.K., Schmidt, M., Blazar, B.R. and Tolar, J. (2015) Fanconi Anemia Gene Editing by the CRISPR/Cas9 System. Human Gene Therapy, 26, 114-126. https://doi.org/10.1089/hum.2014.111
|
[93]
|
Long, C., Amoasii, L., Mireault, A.A., McAnally, J.R., Li, H., Sanchez-Ortiz, E., Bhattacharyya, S., Shelton, J.M., Bassel-Duby, R. and Olson, E.N. (2016) Postnatal Genome Editing Partially Restores Dystrophin Expression in a Mouse Model of Muscular Dystrophy. Science, 351, 400-403.
https://doi.org/10.1126/science.aad5725
|
[94]
|
Yin, H., Xue, W., Chen, S., Bogorad, R.L., Benedetti, E., Grompe, M., Koteliansky, V., Sharp, P.A., Jacks, T. and Anderson, D.G. (2014) Genome Editing with Cas9 in Adult Mice Corrects a Disease Mutation and Phenotype. Nature Biotechnology, 32, 551-553. https://doi.org/10.1038/nbt.2884
|
[95]
|
Ding, Q., Strong, A., Patel, K.M., Ng, S.L., Gosis, B.S., Regan, S.N., Cowan, C.A., Rader, D.J. and Musunuru, K. (2014) Permanent Alteration of PCSK9 with in Vivo CRISPR-Cas9 Genome Editing. Circulation Research, 115, 488-492.
https://doi.org/10.1161/CIRCRESAHA.115.304351
|
[96]
|
Heidenreich, M. and Zhang, F. (2016) Applications of CRISPR-Cas Systems in Neuroscience. Nature Reviews Neuroscience, 17, 36-44.
https://doi.org/10.1038/nrn.2015.2
|
[97]
|
Swiech, L., Heidenreich, M., Banerjee, A., Habib, N., Li, Y., Trombetta, J., Sur, M. and Zhang, F. (2015) In Vivo Interrogation of Gene Function in the Mammalian Brain Using CRISPR-Cas9. Nature Biotechnology, 33, 102-106.
https://doi.org/10.1038/nbt.3055
|
[98]
|
Yao, S., He, Z. and Chen, C. (2015) CRISPR/Cas9-Mediated Genome Editing of Epigenetic Factors for Cancer Therapy. Human Gene Therapy, 26, 463-471.
https://doi.org/10.1089/hum.2015.067
|
[99]
|
Xue, W., Chen, S., Yin, H., Tammela, T., Papagiannakopoulos, T., Joshi, N.S., Cai, W., Yang, G., Bronson, R., Crowley, D.G., Zhang, F., Anderson, D.G., Sharp, P.A. and Jacks, T. (2014) CRISPR-Mediated Direct Mutation of Cancer Genes in the Mouse Liver. Nature, 514, 380-384. https://doi.org/10.1038/nature13589
|
[100]
|
Wang, D., Mou, H., Li, S., Li, Y., Hough, S., Tran, K., Li, J., Yin, H., Anderson, D.G., Sontheimer, E.J., Weng, Z., Gao, G. and Xue, W. (2015) Adenovirus-Mediated Somatic Genome Editing of Pten by CRISPR/Cas9 in Mouse Liver in Spite of Cas9-Specific Immune Responses. Human Gene Therapy, 26, 432-442.
https://doi.org/10.1089/hum.2015.087
|
[101]
|
Hu, W., Kaminski, R., Yang, F., Zhang, Y., Cosentino, L., Li, F., Luo, B., Alvarez-Carbonell, D., Garcia-Mesa, Y., Karn, J., Mo, X. and Khalili, K. (2014) RNA-Directed Gene Editing Specifically Eradicates Latent and Prevents New HIV-1 Infection. Proceedings of the National Academy of Sciences of the United States of America USA, 111, 11461-11466. https://doi.org/10.1073/pnas.1405186111
|
[102]
|
Li, Z., Liu, Z.B., Xing, A., Moon, B.P., Koelhoffer, J.P., Huang, L., Ward, R.T., Clifton, E., Falco, S.C. and Cigan, A.M. (2015) Cas9-Guide RNA Directed Genome Editing in Soybean. Plant Physiology, 169, 960-970.
https://doi.org/10.1104/pp.15.00783
|
[103]
|
Wang, W., Ye, C., Liu, J., Zhang, D., Kimata, J.T. and Zhou, P. (2014) CCR5 Gene Disruption via Lentiviral Vectors Expressing Cas9 and Single Guided RNA Renders Cells Resistant to HIV-1 Infection. PLoS ONE, 9, e115987.
https://doi.org/10.1371/journal.pone.0115987
|
[104]
|
Ye, L., Wang, J., Beyer, A.L., Teque, F., Cradick, T.J., Qi, Z., Chang, J.C., Bao, G., Muench, M.O., Yu, J., Levy, J.A. and Kan, Y.W. (2014) Seamless Modification of Wild-Type Induced Pluripotent Stem Cells to the Natural CCR5Δ32 Mutation Confers Resistance to HIV Infection. Proceedings of the National Academy of Sciences of the United States of America USA, 111, 9591-9596.
https://doi.org/10.1073/pnas.1407473111
|
[105]
|
Zhang, S. and Sodroski, J. (2015) Efficient Human Immunodeficiency Virus (HIV-1) Infection of Cells Lacking PDZD8. Virology, 481, 73-78.
https://doi.org/10.1016/j.virol.2015.01.034
|
[106]
|
Liao, H.K., Gu, Y., Diaz, A., Marlett, J., Takahashi, Y., Li, M., Suzuki, K., Xu, R., Hishida, T., Chang, C.J., Esteban, C.R., Young, J. and Izpisua-Belmonte, J.C. (2015) Use of the CRISPR/Cas9 System as an Intracellular Defense against HIV-1 Infection in Human Cells. Nature Communications, 6, Article ID: 6413.
https://doi.org/10.1038/ncomms7413
|
[107]
|
Hou, P., Chen, S., Wang, S., Yu, X., Chen, Y., Jiang, M., Zhuang, K., Ho, W., Hou, W., Huang, J. and Guo, D. (2015) Genome Editing of CXCR4 by CRISPR/cas9 Confers Cells Resistant to HIV-1 Infection. Scientific Reports, 5, Article No. 15577.
https://doi.org/10.1038/srep15577
|
[108]
|
Wang, J. and Quake, S.R. (2014) RNA-Guided Endonuclease Provides a Therapeutic Strategy to Cure Latent Herpesviridae Infection. Proceedings of the National Academy of Sciences of the United States of America USA, 111, 13157-13162.
https://doi.org/10.1073/pnas.1410785111
|
[109]
|
Hu, Z., Yu, L., Zhu, D., Ding, W., Wang, X., Zhang, C., Wang, L., Jiang, X., Shen, H., He, D., Li, K., Xi, L., Ma, D. and Wang, H. (2014) Disruption of HPV16-E7 by CRISPR/Cas System Induces Apoptosis and Growth Inhibition in HPV16 Positive Human Cervical Cancer Cells. BioMed Research International, 2014, Article ID: 612823. https://doi.org/10.1155/2014/612823
|
[110]
|
Kennedy, E.M., Bassit, L.C., Mueller, H., Kornepati, A.V.R., Bogerd, H.P., Nie, T., Chatterjee, P., Javanbakht, H., Schinazi, R.F. and Cullen, B.R. (2015) Suppression of Hepatitis B Virus DNA Accumulation in Chronically Infected Cells Using a Bacterial CRISPR/Cas RNA-Guided DNA Endonuclease. Virology, 476, 196-205.
https://doi.org/10.1016/j.virol.2014.12.001
|
[111]
|
Li, C., Guan, X., Du, T., Jin, W., Wu, B., Liu, Y., Wang, P., Hu, B., Griffin, G.E., Shattock, R.J. and Hu, Q. (2015) Inhibition of HIV-1 Infection of Primary CD4+ T-Cells by Gene Editing of CCR5 Using Adenovirus-Delivered CRISPR/Cas9. Journal of General Virology, 96, 2381-2393. https://doi.org/10.1099/vir.0.000139
|
[112]
|
Peng, J., Wang, Y., Jiang, J., Zhou, X., Song, L., Wang, L., Ding, C., Qin, J., Liu, L., Wang, W., Liu, J., Huang, X., Wei, H. and Zhang, P. (2015) Production of Human Albumin in Pigs through CRISPR/Cas9-Mediated Knockin of Human cDNA into Swine Albumin Locus in the Zygotes. Scientific Reports, 5, Article No. 16705.
https://doi.org/10.1038/srep16705
|
[113]
|
Svitashev, S., Young, J.K., Schwartz, C., Gao, H., Falco, S.C. and Cigan, A.M. (2015) Targeted Mutagenesis, Precise Gene Editing, and Site-Specific Gene Insertion in Maize Using Cas9 and Guide RNA. Plant Physiology, 169, 931-945.
https://doi.org/10.1104/pp.15.00793
|
[114]
|
Ali, A., Bang, S.W., Chung, S.M. and Staub, J.E. (2015) Plant Transformation via Pollen Tube-Mediated Gene Transfer. Plant Molecular Biology Reporter, 33, 742-747.
https://doi.org/10.1007/s11105-014-0839-5
|
[115]
|
Waltz, E. (2016) Gene-Edited CRISPR Mushroom Escapes US Regulation. Nature, 532, 293. https://doi.org/10.1038/nature.2016.19754
|