Recent advances in fiber-optic DNA biosensors

Abstract

Fiber-optic DNA biosensors are a kind of ana-lytic setups, which convert the Waston-Crick base pairs matching duplex or Hoogsteen’s tri-plex (T/A-T, C/G-C) formation into a readable analytical signals when functionalized single- strands DNA (ssDNA) or double-strands DNA (dsDNA) of interest are immobilized on the sur-face of fiber-optic hybrids with target DNA or interacts with ligands. This review will provide the information about the fiber-optic DNA bio-sensors classified into two categories depend-ing on the end fiber and side fiber with or with-out the labels—label-free fiber-optic DNA bio-sensors and labeled fiber-optic DNA biosensor in recent years. Both are dissertated, and em-phasis is on the label-free fiber-optic DNA bio-sensors. Fiber-optic DNA biosensors had got great progresses because fiber-optic has more advantages over the other transducers and are easily processed by nanotechnology. So fiber- optic DNA biosensors have increasingly at-tracted more attention to research and develop the new fiber-optic DNA biosensors that inte-grated with the “nano-bio-info” technology for in vivo test, single molecular detection and on-line medical diagnosis. Finally, future pros-pects to the fiber-optic DNA biosensors are predicted.

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Wang, Y. , Pang, X. and Zhang, Y. (2009) Recent advances in fiber-optic DNA biosensors. Journal of Biomedical Science and Engineering, 2, 312-317. doi: 10.4236/jbise.2009.25046.

Conflicts of Interest

The authors declare no conflicts of interest.

References

[1] Uddin, A. H., Piunno, P. A., Hudson, R. H., Damha M. J., and Krull U. J., (1997) Nucleic Acids Research, 25(20), 4139–4146.
[2] Bates, P. J., Reddoch, J. F., Hansakul, P., Arrow, A., Dale, R., and Miller, D. M., (2002) Anal. Biochem., 307(2) 235–243.
[3] Wang, J., Rivas, G., Cai, X., Palecek, E., Nielsen, P., Shiraishi, H., et al. (1997) Anal. Chim. Acta., 347(1), 1–8.
[4] Hoffmann, P., Dutoit, B., and Salathé, R. P., (1995) Ultrami-croscopy, 6, 165–170.
[5] St?ckle, R., Fokas, C., Deckert, V., Zenobi, R., Sick, B., Hecht, B., et al. (1999) Appl. Phys. Lett., 75(2), 160–162.
[6] Liu, X. M., Wang, J., and Li, D. C., (1998) Rev. Scient. In-strum., 69(9), 3439–3440.
[7] Lee, B., (2003) Optical Fiber Technology, 9(2), 57–59.
[8] Mitsuaki, W. and Kotaro, K., (2003) Sensors and Actuators B: Chemical, 89(1), 126–130.
[9] Han, Y. G., Tran, T. V. A., Kim, S. H., and Lee, S. B., (2005) Opt. Lett., 30(11), 1282–1284.
[10] Cullum, B. M., Griffin, G. D., Miller, G. H., and Vo-Dinh, T., (2000) Analytical Biochemistry, 277(1), 25–32.
[11] Chen, X., Zhang, L., Zhou, K., Davies, E., Sugden, K., and Bennion, I., et al., (2007) Opt. Lett., 32(17), 2541–2543.
[12] Vo-Dinh, T., Cullum, B. M., and Stokes, D. L., (2001) Sensors and Actuators B: Chemical, 74(1), 2–11.
[13] Rogers, K. R., Apostol, A., Steen, Madsen, J., and Spencer, C. W., (2001) Analytica Chimica Acta, 444(1), 51–60.
[14] Maxwell, D. J., Taylor, J. R., and Nie, S. M., (2002) J. Am. Chem. Soc., 124(32), 9606–9612.
[15] Zhang, D., Chen, Y., Chen, H. Y., and Xia, X. H., (2004) Anal. Bioanal. Chem., 379(7), 1025–1030.
[16] Li, J., Ng, H. T., Cassell, A., Fan, W., Chen, H., and Ye, Q., et al., (2003) Nano Lett., 3(5), 597–602.
[17] Balasubramanian, K. and Burghard, M., (2006) Anal. Bioanal. Chem., 385(3), 452–468.
[18] Li, Z., Rajendran, B., Kamins, T. I., Li, X., Chen, Y., and Wil-liams, R. S., (2005) Applied Physics A: Materials Science & Processing, 80(6), 1257–1263.
[19] Zheng, G. F., Patolsky, F., Cui, Y., Wang, W. U., and Lieber, C. M., (2005) Nature Biotechnology, 23(10), 1294–1301.
[20] Cui, Y., Wei, Q. Q, Park, H. K, and Lieber, C. M., (2001) Sci-ence, 293 (5533), 1289–1292.
[21] Li, Z., Chen, Y., Li, X., Kamins, T. I., Nauka, K., and Williams, R. S., (2004) Nano Lett., 4(2), 245–247.
[22] Park, I., Li, Z. Y., Li, X. M., Pisano, A. P., and Williams, R. S., (2007) Biosensors and Bioelectronics, 22(9), 2065–2070.
[23] Kamins, T. I., Sharma, S., Yasseri, A. A., Li, Z., and Straznicky, J., (2006) Nanotechnology, 17(11), S291– S297.
[24] Lou, J. Y., Tong, L. M., and Ye, Z. Z., (2005) Optics express, 13(6), 2135–2140.
[25] Marazuela, M. and Moreno-bondi, M., (2002) Anal. Bioanal. Chem., 372(5), 664–682.
[26] Mehrvar, M., Bis, C., Scharer, J. M., Moo, M., and Luong, J. H., (2000) Analytical Sciences, 16(7), 677–692.
[27] Niu S. Y., Wang S. J., Shi C., Zhang S. S., (2008) J Fluoresc, 18, 227-235.
[28] Piunno, P. A. E., Krull, U. J., Hudson, H. E., Damha, M. J., and Cohen, H., (1994) Analytica Chimica Acta, 288(3), 205–214.
[29] Svanvik, N., Stahlberg, A., Sehlstedt, U., Sjoback, R., and Kubsita, M., (2000) Anal. Biochem., 287(1), 179–182.
[30] Isacsson, J., Cao, H., Ohlsson, L., Nordgren, S., Svanvik, N., and Westman, G., et al., (2000) Mol. Cell Probes, 14(5), 321–328.
[31] Svanvik, N., Westman, G., Wang, D., and Kubsita, M., (2000) Anal. Biochem., 281(1), 26–35.
[32] Svanvik, N., Nygren, J., Westman, G., Kubsita, M., (2001) J. Am. Chem. Soc., 123(5), 803–809.
[33] Piunno, P. A. E., Krull, U. J., Hudson, H. E., Damha, M. J., and Cohen, H., (1995) Anal. Chem., 67(15), 2635–2643.
[34] Monk, D. J. and Walt, D. R., (2004) Anal. Bioanal. Chem., 379(7), 931–945.
[35] Wang, X. F. and Krull, U. J., (2002) Analytica Chimica Acta, 470(1), 57–70.
[36] Wang, X. F. and Krull, U. J., (2005) J. Mater. Chem., 15(27), 2801-2809.
[37] Wang, X. F. and Krull, U. J., (2005) Bioorg. Med. Chem. Lett., 15(6), 1725–1729.
[38] Baird, C. L. and Myszka, D. G., (2001) J. Mol. Recognit., 14(5), 261–268.
[39] Rich, R. L. and Myszka, D. G., (2002) J. Mol. Recognit., 15(6), 352–376.
[40] Hur, Y., Han, J., Seon, J., Pak, Y. E., and Roh, Y., (2005) Sen-sors and Actuators A: Physical, 120(2), 462-467.
[41] Minunni, M., Mannelli, I., Spiriti, M. M., Tombelli, S., and Mascini, M., (2004) Analytica Chimica Acta, 526(1), 19-25.
[42] Xu, Y., Jiang, Y., Yang, L., He, P. G., and Fang, Y. Z., (2005) Chinese Journal of Chemistry, 23(12), 1665–1670.
[43] Chen, Y., Elling, Lee, Y., and Chong, S., (2006) J. Phys. Conf. Ser., 34, 204–209.
[44] Kerman, K., Morita, Y., Takamura, Y., and Tamiya, E., (2005) Anal. Bioanal. Chem., 381(6), 1114–1121.
[45] Kerman, K., Morita, Y., Takamura, Y., and Tamiya, E., (2003) Electrochem. Comm., 5(10), 887–889.
[46] Peng, H., Soeller, C., Vigar, N., Kilmartin, P. A., Cannell, M. B., Bowmaker, G. A., et al. (2005) Biosensors and Bioelec-tronics, 20(9), 1821–1828.
[47] Mir1, M. and Katakis, I., (2005) Anal. Bioanal. Chem., 381(5), 2618–2642.
[48] Li, P. Y., Lin, B., Gerstenmaier, J., and Cunningham, B. T., (2004) Sensors and Actuators. B: Chemical, 99(1), 6–13.
[49] Bianchi, N., Rutigliano, C., Tomassetti, M., Feriotto, G., Zor-zato, F., and Gambari, R., (1997) Clin. Diagn. Virol., 8(3), 199–208.
[50] Minunni, M., Tombelli, S., Mariottie, E., and Mascini, M., (2001) Fresenius J. Anal. Chem., 369(7), 589–593.
[51] Persson, B., Stenhag, K., Nilsson, P., Larsson, A., Uhlen, M., and Nygren, P., (1997) Anal. Biochem., 246(1), 34–44.
[52] Collings, A. F. and Caruso, F., (1997) Rep. Prog. Phys., 60(11), 1397–1445.
[53] Jiang, T., Minunni, M., Wilson, P., Zhang, J., Turner, A. P. F., and Mascini, M., (2002) Biosensors and Bioelectronics, 20(10), 1939–1945.
[54] Peterlinz, K. A., Georgiadis, R. M., Herne, T. M., and Tarlov, M., (1997) J. Am. Chem. Soc., 119(14), 3401–3402.
[55] Peterson, A. W., Wolf, L. K., and Georgiadis, R. M., (2002) J. Am. Chem. Soc., 124(49), 14601–14607.
[56] Bianchi, N., Rutigliano, C., Tomassetti, M., Feriotto, G., Zor-zato, F., and Gambari, R., (1997) Clin. Diagn. Virol., 8(3), 199–208.
[57] Kambhampati, D. K. and Knoll, W., (1999) Current Opinion in Colloid & Interface Science, 4(4), 273–280.
[58] Lin, H. Y., Tsai, W. H., Tsao, Y. C., and Sheu, B. C., (2007) Applied Optics, 46(5), 800–806.
[59] Wang, J. Y., (1992) SPIE Fiber Optic Medical and Fluorescent Sensors and Applications, 1648, 44–50.
[60] Tiberg, F., Brink, C., Hellsten, M., and Holmberg, K., (1992) Colloid & Polymer Science, 270(12), 1188–1193.
[61] Mahltig, B., Werner, C., Müller, M., Jér?me, R., and Stamm, M., (2001) Journal of Biomaterials Science, Polymer Edition, 12(9), 995–1010.
[62] Emma Hitt, (2005) Drug Discovery & Development, http://cmliris.harvard.edu/news/2004/DrugDiscDev_Sep04.pdf.
[63] McLoughlin, D. and Langevin, D., (2004) Physicochemical and Engineering Aspects, 250, 79–87.
[64] Wong, A. K. Y. and Krull, U. J., (2005) Anal. and Bioanal. Chem., 383(2), 187–200.
[65] Shabani, A., Mak, A. W. H., Gerges, I., Cuccia, L. A., and Lawrence, M. F., (2006) Talanta, 70(3), 615–623.
[66] Hradetzky, D., Mueller, C., and Reinecke, H., (2006) J. Opt. A: Pure Appl. Opt., 8(7), S360–S364.
[67] Rindorf. L., H?iby, P. E., Jensen, J. B., Pedersen, L. H., Bang, O., and Geschke, O., (2006) Anal. Bioanal. Chem. 385(8), 1370–1375.
[68] Zeng, J., Almadidy, A., Watterson, J., and Krull, U. J., (2003) Sensors and Actuators B: Chemical, 90(1), 68–75.

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