[1]
|
Torsvik, V. and Ovreas, L. (2002) Microbial diversity and function in soil: From genes to ecosystems. Current Opinion in Microbiology, 5, 240-245.
doi:10.1016/S1369-5274(02)00324-7
|
[2]
|
Barrios, E. (2007) Soil biota, ecosystem services and land productivity. Ecological Economics, 64, 269-285.
doi:10.1016/j.ecolecon.2007.03.004
|
[3]
|
Pane, C., Villecco, D., Pentangelo,A., Lahoz, E. and Zaccardelli, M. (2011) Integration of soil solarization with Brassica carinata seed meals amendment in a greenhouse lettuce production system. Acta Agriculturae Scandinavica, Section B—Soil & Plant Science.
doi:10.1080/09064710.2011.613850
|
[4]
|
Nannipieri, P., Ascher, J., Ceccherini, M.T., Landi, L., Pietramellara, G. and Renella, G. (2003) Microbial diversity and soil functions. European Journal of Soil Science, 54, 655-670.
doi:10.1046/j.1351-0754.2003.0556.x
|
[5]
|
Maron, P.A., Mougel, C. and Ranjard, L. (2011) Soil microbial diversity: Methodological strategy, spatial overview and functional interest. Comptes Rendus Biologies, 334, 403-411. doi:10.1016/j.crvi.2010.12.003
|
[6]
|
Rondon, M.R., August, P.R., Bettermann, A.D., Brady, S.F., Grossman, T.H., Liles, M.R., Loiacono, K.A., Lynch, B.A., MacNeil, I.A., Minor, C., Tiong, C.L., Gilman, M., Osburne, M.S., Clardy, J., Handelsman, J. and Goodman, R.M. (2000) Cloning the soil metagenome: A strategy for accessing the genetic and functional diversity of uncultured micro-organisms. Applied and Environmental Microbiology, 66, 2541-2547.
doi:10.1128/AEM.66.6.2541-2547.2000
|
[7]
|
Handelsman, J., Rondon, M.R., Brady, S.F., Clardy, J. and Goodman R.M. (1998) Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products. Chemistry & Biology, 5, 245-249.
doi:10.1016/S1074-5521(98)90108-9
|
[8]
|
Kell, D.B., Kaprelyants, A.S., Weichart, D.H., Harwood, C.R. and Barer, M.R. (1998) Viability and activity in readily culturable bacteria: A review and discussion of the practical issues. Antonie van Leeuwenhoek, 73, 169-187.
doi:10.1023/A:1000664013047
|
[9]
|
Fierer N., Jackson, J.A., Vilgalys, R. and Jackson, R.B. (2005) Assessment of Soil Microbial Community Structure by Use of Taxon-Specific Quantitative PCR Assays. Applied and Environmental Microbiology, 71, 4117-4120.
doi:10.1128/AEM.71.7.4117-4120.2005
|
[10]
|
Plassart, P., Vinceslas, M.A., Gangneux, C., Mercier, A., Barray, S. and Laval, K. (2008) Molecular responses of soil microbial communities under grassland restoration. Agriculture, Ecosystems and Environment, 127, 286-293.
doi:10.1016/j.agee.2008.04.008
|
[11]
|
Crecchio, C., Gelsomino, A., Ambrosoli, R., Minati, J.L. and Ruggiero, P. (2004) Functional and molecular responses of soil microbial communities under differing soil management practices. Soil Biology & Biochemistry, 36, 1873-1883. doi:10.1016/j.soilbio.2004.05.008
|
[12]
|
Lopes, A.R., Faria, C., Prieto-Fernandez, á. Trasar-Cepeda, C., Manaia, C.M. and Nunes, O.C. (2011) Comparative study of the micobial diversity of bulk paddy soil of two rice fields subjected to organic and conventional farming. Soil Biology & Biochemistry, 43, 115-125.
doi:10.1016/j.soilbio.2010.09.021
|
[13]
|
Versalovic, J., Koeuth, T. and Lupski, J.R. (1991) Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomics. Nucleic Acid Research, 19, 6823-6831.
doi:10.1093/nar/19.24.6823
|
[14]
|
Thies, J.E. (2004) Eco-biological soil assessment: Analytical approaches through molecular methods. Procedings of I International Conference: Soil and compost eco-biology. 15-17 Sep-tember 2004, León, Spain.
|
[15]
|
Kirk, J.L., Beaduette, L.A., Hart, M., Moutoglis, P., Klironomos, J.N., Lee, H. and Trevors, J.T. (2004) Methods of studying soil microbial diversity. Journal of microbiological methods, 58, 169-188.
doi:10.1016/j.mimet.2004.04.006
|
[16]
|
Vassart, G., Georges, M., Monsieur, R., Brocas, H., Lequarre, AS. and Christophe, D. (1987) A sequence in M13 phage detects hypervariable minisatellites in human and animal DNA. Science, 235, 683-684.
doi:10.1126/science.2880398
|
[17]
|
Epplen, J.T. (1988) On simple repeated GATCA sequences in animal genomes: a critical reappraisal. Journal of Heredity, 79, 409-417.
|
[18]
|
Ali, S., Muller, C.R. and Epplen, J.T. (1986) DNA fingerprinting by oligonucleotide probes specific for simple repeats. Human Genetics, 74, 239-243.
doi:10.1007/BF00282541
|
[19]
|
Vogel, J.M. and Scolnik, P.A. (1997) Direct amplifications from microsatellites: detection of simple sequence repeat-based polymorphisms without cloning. In: Caetano-Anollés, G. and Gresshoff, P.M., Eds., DNA Markers: Protocols, Applications and Overviews, Wiley, John and Sons, New York, 133-150.
|
[20]
|
Zhou, J., Bruns, M.A. and Tiedje, J.M. (1996). DNA recovery from soils of diverse composition. Applied and Environmental Microbiology, 62, 316-322.
|
[21]
|
Khashnobish, A., Hamann, A., Osiewacz, H.D. (1999) Modulation of gene expression by (CA)n microsatellites in the filamentous ascomycete Podospora anserina. Applied Microbiology and Biotechnology, 52, 191-195.
doi:10.1007/s002530051508
|
[22]
|
Yurkov, A.M., Chernov, I.Y. (2005). Geographical Races of Certain Species of Ascomycetous Yeasts in the Moscow and Novosibirsk Regions. Microbiology, 74, 597- 601. doi:10.1007/s11021-005-0108-6
|
[23]
|
Harish, S., Kavino, M., Kumar, N., Balasubramanian, P., Samiyappan, R. (2009). Induction of defense-related proteins by mixtures of plant growth promoting endophytic bacteria against Banana bunchy top virus. Biological Control, 51, 16-25. doi:10.1016/j.biocontrol.2009.06.002
|
[24]
|
Anderson, I., Chambers, S., Cairney, J. (2009) Taxonomy and population biology of south-eastern australian Pisolithus species. Australasian Mycologist, 18, 37.
|
[25]
|
Midgley, D., Chambers, S., Liu, G., Williams, A., Cairney, J. (2009) Molecular determination of diversity in ericoid mycorrhizal endophytes from Woollsia pungens (Cav.) F. Muell. (Epacridaceae). Australasian Mycologist, 18, 39.
|
[26]
|
Sneath, P.H.A. and Sokal, R.R. (1973) Numerical Taxonomy: the principles and practice of numerical classification, San Francisco, freeman, 573.
|
[27]
|
Vauterin, L. and Vauterin, P. (1992) Computer-aided objective comparison of electrophoresis patterns for grouping and identification of microorganisms. European Microbiology, 1, 37-42.
|
[28]
|
Wang, Y., Shi, J., Wang, H., Lin, Q., Chen, X. and Chen, Y. (2007) The influence of soil heavy metals pollution on soil microbial biomass, enzyme activity, and community composition near a copper smelter. Ecotoxicology and Environmental Safety, 67, 75-81.
doi:10.1016/j.ecoenv.2006.03.007
|
[29]
|
Brimecombe, M.J., De Leij, F.A. and Lynch, J.M. 2001. The effect of root exudates on rhizosphere microbial populations. In: Pinton, R., Varaninin, Z. and Nannipieri, P., Eds., The Rhizosphere: Biochemistry and Organic Substances at the Soil-Plant Interface, M. Dwekker, New York, 95-140.
|
[30]
|
Grayston, S.J., Shenquiang, W., Campbell, C.D. and Edwards, A.C. 1998. Selective influence of plant species on microbial diversity in the rhizosphere. Soil Biology & Biochemistry, 30, 369-378.
doi:10.1016/S0038-0717(97)00124-7
|
[31]
|
Larkin, R.P. and Honeycutt, C.W. (2006). Effects of different 3-year cropping systems on soil microbial communities and Rhizoctonia diseases of potato. Phytopathology, 96, 68-79. doi:10.1094/PHYTO-96-0068
|
[32]
|
Srivastava, R., Roseti, D. and Sharma, A.K. (2007). The evaluation of microbial diversity in a vegetable based cropping system under organic farming practices. Applied Soil Ecology, 36, 116-123.
doi:10.1016/j.apsoil.2007.01.008
|
[33]
|
Acosta-Martínez, V., Dowd, S.E., Bell, C.W., Lascano, R., Booker, J.D., Zobeck, T.M. and Upchurch, D.R. (2010). Microbial community composition as affected by dryland cropping systems and tillage in a semiarid sandy soil. Diversity, 2, 910-931. doi:10.3390/d2060910
|
[34]
|
Ettema, C.H. and Wardle, D.A. (2002) Spatial soil ecology. Trends in Ecology and Evolution, 17, 177-183.
doi:10.1016/S0169-5347(02)02496-5
|
[35]
|
Fierer, N. (2008). Microbial biogeography: patterns in microbial diversity across space and time. In: Zengler, K., Ed., Accessing Uncultivated Microorganisms: From the Environment to Organisms and Genomes and Back, ASM Press, Washington DC, 95-115
|