[1]
|
Jeck, W.R., Sorrentino, J.A., Wang, K., Slevin, M.K., Burd, C.E., Liu, J., Marzluff, W.F. and Sharpless, N.E. (2013) Circular RNAs Are Abundant, Conserved, and Associated with ALU Repeats. RNA, 19, 141-157. http://dx.doi.org/10.1261/rna.035667.112
|
[2]
|
Jeck, W.R. and Sharpless, N.E. (2014) Detecting and Characterizing Circular RNAs. Nature Biotechnology, 32, 453-461. http://dx.doi.org/10.1038/nbt.2890
|
[3]
|
Memczak, S., Jens, M., Elefsinioti, A., Torti, F., Krueger, J., Rybak, A., Maier, L., Mackowiak, S.D., Gregersen, L.H., Munschauer, M., et al. (2013) Circular RNAs Are a Large Class of Animal RNAs with Regulatory Potency. Nature, 495, 333-338. http://dx.doi.org/10.1038/nature11928
|
[4]
|
Salzman, J., Gawad, C., Wang, P.L., Lacayo, N. and Brown, P.O. (2012) Circular RNAs Are the Predominant Transcript Isoform from Hundreds of Human Genes in Diverse Cell Types. PLoS One, 7, e30733. http://dx.doi.org/10.1371/journal.pone.0030733
|
[5]
|
Hansen, T.B., Jensen, T.I., Clausen, B.H., Bramsen, J.B., Finsen, B., Damgaard, C.K. and Kjems, J. (2013) Natural RNA Circles Function as Efficient microRNA Sponges. Nature, 495, 384-388. http://dx.doi.org/10.1038/nature11993
|
[6]
|
Houseley, J.M., Garcia-Casado, Z., Pascual, M., Paricio, N., O’Dell, K.M., Monckton, D.G. and Artero, R.D. (2006) Noncanonical RNAs from Transcripts of the Drosophila muscleblind Gene. The Journal of Heredity, 97, 253-260. http://dx.doi.org/10.1093/jhered/esj037
|
[7]
|
Doose, G., Alexis, M., Kirsch, R., Findeiss, S., Langenberger, D., Machne, R., Morl, M., Hoffmann, S. and Stadler, P.F. (2013) Mapping the RNA-Seq Trash Bin: Unusual Transcripts in Prokaryotic Transcriptome Sequencing Data. RNA Biology, 10, 1204-1210. http://dx.doi.org/10.4161/rna.24972
|
[8]
|
Vicens, Q. and Westhof, E. (2014) Biogenesis of Circular RNAs. Cell, 159, 13-14. http://dx.doi.org/10.1016/j.cell.2014.09.005
|
[9]
|
Wang, P.L., Bao, Y., Yee, M.C., Barrett, S.P., Hogan, G.J., Olsen, M.N., Dinneny, J.R., Brown, P.O. and Salzman, J. (2014) Circular RNA Is Expressed across the Eukaryotic Tree of Life. PLoS One, 9, e95116. http://dx.doi.org/10.1371/journal.pone.0090859
|
[10]
|
Suzuki, H., Zuo, Y., Wang, J., Zhang, M.Q., Malhotra, A. and Mayeda, A. (2006) Characterization of RNase R-Digested Cellular RNA Source That Consists of Lariat and Circular RNAs from Pre-mRNA Splicing. Nucleic Acids Research, 34, e63. http://dx.doi.org/10.1093/nar/gkl151
|
[11]
|
Guo, J.U., Agarwal, V., Guo, H. and Bartel, D.P. (2014) Expanded Identification and Characterization of Mammalian Circular RNAs. Genome Biology, 15, 409. http://dx.doi.org/10.1186/s13059-014-0409-z
|
[12]
|
Salzman, J., Chen, R.E., Olsen, M.N., Wang, P.L. and Brown, P.O. (2013) Cell-Type Specific Features of Circular RNA Expression. PLoS Genetics, 9, e1003777. http://dx.doi.org/10.1371/journal.pgen.1003777
|
[13]
|
Rybak-Wolf, A., Stottmeister, C., Glazar, P., Jens, M., Pino, N., Giusti, S., Hanan, M., Behm, M., Bartok, O., Ashwal-Fluss, R., et al. (2015) Circular RNAs in the Mammalian Brain Are Highly Abundant, Conserved, and Dynamically Expressed. Molecular Cell, 58, 870-885. http://dx.doi.org/10.1016/j.molcel.2015.03.027
|
[14]
|
Westholm, J.O., Miura, P., Olson, S., Shenker, S., Joseph, B., Sanfilippo, P., Celniker, S.E., Graveley, B.R. and Lai, E.C. (2014) Genome-Wide Analysis of Drosophila Circular RNAs Reveals Their Structural and Sequence Properties and Age-Dependent Neural Accumulation. Cell Reports, 9, 1966-1980. http://dx.doi.org/10.1016/j.celrep.2014.10.062
|
[15]
|
Ashwal-Fluss, R., Meyer, M., Pamudurti, N.R., Ivanov, A., Bartok, O., Hanan, M., Evantal, N., Memczak, S., Rajewsky, N. and Kadener, S. (2014) circRNA Biogenesis Competes with Pre-mRNA Splicing. Molecular Cell, 56, 55-66. http://dx.doi.org/10.1016/j.molcel.2014.08.019
|
[16]
|
Wang, Y. and Wang, Z. (2015) Efficient Backsplicing Produces Translatable Circular mRNAs. RNA, 21, 172-179. http://dx.doi.org/10.1261/rna.048272.114
|
[17]
|
Kelly, S., Greenman, C., Cook, P.R. and Papantonis, A. (2015) Exon Skipping Is Correlated with Exon Circularization. Journal of Molecular Biology, in press. http://dx.doi.org/10.1016/j.jmb.2015.02.018
|
[18]
|
Zhang, Y., Zhang, X.O., Chen, T., Xiang, J.F., Yin, Q.F., Xing, Y.H., Zhu, S., Yang, L. and Chen, L.L. (2013) Circular Intronic Long Noncoding RNAs. Molecular Cell, 51, 792-806. http://dx.doi.org/10.1016/j.molcel.2013.08.017
|
[19]
|
Liang, D. and Wilusz, J.E. (2014) Short Intronic Repeat Sequences Facilitate Circular RNA Production. Genes & Development, 28, 2233-2247. http://dx.doi.org/10.1101/gad.251926.114
|
[20]
|
Conn, S.J., Pillman, K.A., Toubia, J., Conn, V.M., Salmanidis, M., Phillips, C.A., Roslan, S., Schreiber, A.W., Gregory, P.A. and Goodall, G.J. (2015) The RNA Binding Protein Quaking Regulates Formation of circRNAs. Cell, 160, 1125-1134. http://dx.doi.org/10.1016/j.cell.2015.02.014
|
[21]
|
Chen, L. and Shan, G. (2015) Circular RNAs Remain Peculiarly Unclear in Biogenesis and Function. Science China Life Sciences, in press. http://dx.doi.org/10.1007/s11427-015-4855-y
|
[22]
|
Gaelle, J.S., Talhouarne, G.J. and Gall, J.G. (2014) Lariat Intronic RNAs in the Cytoplasm of Xenopus tropicalis Oocytes. RNA, 20, 1476-1487. http://dx.doi.org/10.1261/rna.045781.114
|
[23]
|
Li, Z., Huang, C., Bao, C., Chen, L., Lin, M., Wang, X., Zhong, G., Yu, B., Hu, W., Dai, L., et al. (2015) Exon-Intron Circular RNAs Regulate Transcription in the Nucleus. Nature Structural & Molecular Biology, 22, 256-264. http://dx.doi.org/10.1038/nsmb.2959
|
[24]
|
You, X., Vlatkovic, I., Babic, A., Will, T., Epstein, I., Tushev, G., Akbalik, G., Wang, M., Glock, C., Quedenau, C., et al. (2015) Neural Cir-cular RNAs Are Derived from Synaptic Genes and Regulated by Development and Plasticity. Nature Neuroscience, 18, 603-610. http://dx.doi.org/10.1038/nn.3975
|
[25]
|
Rossi, M., Inoue, S., Walewska, R., Knight, R.A., Dyer, M.J., Cohen, G.M. and Melino, G. (2009) Caspase Cleavage of Itch in Chronic Lymphocytic Leukemia Cells. Biochemical and Biophysical Research Communications, 379, 659-664. http://dx.doi.org/10.1016/j.bbrc.2008.11.154
|
[26]
|
Li, F., Zhang, L., Li, W., Deng, J., Zheng, J., An, M., Lu, J. and Zhou, Y. (2015) Circular RNA ITCH Has Inhibitory Effect on ESCC by Suppressing the Wnt/Beta-Catenin Pathway. Oncotarget, 6, 6001-6013.
|
[27]
|
Thomas, L.F. and Saetrom, P. (2014) Circular RNAs Are Depleted of Polymorphisms at microRNA Binding Sites. Bioinformatics (Oxford, England), 30, 2243-2246. http://dx.doi.org/10.1093/bioinformatics/btu257
|
[28]
|
Chen, C.Y. and Sarnow, P. (1995) Initiation of Protein Synthesis by the Eukaryotic Translational Apparatus on Circular RNAs. Science, 268, 415-417. http://dx.doi.org/10.1126/science.7536344
|
[29]
|
Wilusz, J.E. and Sharp, P.A. (2013) Molecular Biology. A Circuitous Route to Noncoding RNA. Science, 340, 440-441. http://dx.doi.org/10.1126/science.1238522
|
[30]
|
Li, P., Chen, S., Chen, H., Mo, X., Li, T., Shao, Y., Xiao, B. and Guo, J. (2015) Using Circular RNA as a Novel Type of Biomarker in the Screening of Gastric Cancer. Clinica Chimica Acta, 444, 132-136. http://dx.doi.org/10.1016/j.cca.2015.02.018
|
[31]
|
Bachmayr-Heyda, A., Reiner, A.T., Auer, K., Sukhbaatar, N., Aust, S., Bachleitner-Hofmann, T., Mesteri, I., Grunt, T.W., Zeillinger, R. and Pils, D. (2015) Correlation of Circular RNA Abundance with Proliferation—Exemplified with Colorectal and Ovarian Cancer, Idiopathic Lung Fibrosis, and Normal Human Tissues. Scientific Reports, 5, Article No. 8057. http://dx.doi.org/10.1038/srep08057
|
[32]
|
Burd, C.E., Jeck, W.R., Liu, Y., Sanoff, H.K., Wang, Z. and Sharpless, N.E. (2010) Expression of Linear and Novel Circular Forms of an INK4/ARF-Associated Non-Coding RNA Correlates with Atherosclerosis Risk. PLoS Genetics, 6, e1001233. http://dx.doi.org/10.1371/journal.pgen.1001233
|
[33]
|
Hansen, T.B., Kjems, J. and Damgaard, C.K. (2013) Circular RNA and miR-7 in Cancer. Cancer Research, 73, 5609-5612. http://dx.doi.org/10.1158/0008-5472.CAN-13-1568
|
[34]
|
Ghosal, S., Das, S., Sen, R., Basak, P. and Chakrabarti, J. (2013) Circ2Traits: A Comprehensive Database for Circular RNA Potentially Associated with Disease and Traits. Frontiers in Genetics, 4, 283. http://dx.doi.org/10.3389/fgene.2013.00283
|
[35]
|
Costa-Pinheiro, P., Ramalho-Carvalho, J., Vieira, F.Q., Torres-Ferreira, J., Oliveira, J., Goncalves, C.S., Costa, B.M., Henrique, R. and Jeronimo, C. (2015) MicroRNA-375 Plays a Dual Role in Prostate Carcinogenesis. Clinical Epigenetics, 7, 42. http://dx.doi.org/10.1186/s13148-015-0076-2
|
[36]
|
Gong, J., Cui, Z., Li, L., Ma, Q., Wang, Q., Gao, Y. and Sun, H. (2015) MicroRNA-25 Promotes Gastric Cancer Proliferation, Invasion, and Migration by Directly Targeting F-Box and WD-40 Domain Protein 7, FBXW7. Tumor Biology, in press. http://dx.doi.org/10.1007/s13277-015-3510-3
|
[37]
|
Peng, J., Xie, Z., Cheng, L., Zhang, Y., Chen, J., Yu, H., Li, Z. and Kang, H. (2015) Paired Design Study by Real-Time PCR: miR-378* and miR-145 Are Potent Early Diagnostic Biomarkers of Human Colorectal Cancer. BMC Cancer, 15, 158. http://dx.doi.org/10.1186/s12885-015-1123-2
|
[38]
|
Xu, Q., Li, P., Chen, X., Zong, L., Jiang, Z., Nan, L., Lei, J., Duan, W., Zhang, D., Li, X., et al. (2015) miR-221/222 Induces Pancreatic Cancer Progression through the Regulation of Matrix Metalloproteinases. Oncotarget, in press.
|
[39]
|
Kluiver, J., Gibcus, J.H., Hettinga, C., Adema, A., Richter, M.K., Halsema, N., Slezak-Prochazka, I., Ding, Y., Kroesen, B.J. and van den Berg, A. (2012) Rapid Generation of microRNA Sponges for microRNA Inhibition. PLoS ONE, 7, e29275. http://dx.doi.org/10.1371/journal.pone.0029275
|
[40]
|
Ebert, M.S., Neilson, J.R. and Sharp, P.A. (2007) Micro-RNA Sponges: Competitive Inhibitors of Small RNAs in Mammalian Cells. Nature Methods, 4, 721-726. http://dx.doi.org/10.1038/nmeth1079
|
[41]
|
Gentner, B., Schira, G., Giustacchini, A., Amendola, M., Brown, B.D., Ponzoni, M. and Naldini, L. (2009) Stable Knockdown of microRNA in Vivo by Lentiviral Vectors. Nature Methods, 6, 63-66. http://dx.doi.org/10.1038/nmeth.1277
|
[42]
|
Chen, W. and Qin, C. (2015) General Hallmarks of microRNAs in Brain Evolution and Development. RNA Biology, in Press.
|
[43]
|
Paschon, V., Takada, S.H., Ikebara, J.M., Sousa, E., Raeisossadati, R., Ulrich, H. and Kihara, A.H. (2015) Interplay between Exosomes, microRNAs and Toll-Like Receptors in Brain Disorders. Molecular Neurobiology, in press. http://dx.doi.org/10.1007/s12035-015-9142-1
|
[44]
|
Luo, T., Yin, S., Shi, R., Xu, C., Wang, Y., Cai, J., Yue, Y. and Wu, A. (2015) miRNA Expression Profile and Involvement of Let-7d-APP in Aged Rats with Isoflurane-Induced Learning and Memory Impairment. PLoS ONE, 10, e0119336. http://dx.doi.org/10.1371/journal.pone.0119336
|
[45]
|
Liu, Y., Chen, S., Zhang, J., Shan, S., Chen, L., Wang, R., Kan, J. and Xu, T. (2015) Analysis of Serum MicroRNAs as Potential Biomarker in Coronary Bifurcation Lesion. Disease Markers, 2015, Article ID: 351015.
|
[46]
|
Dorn II, G.W. (2015) Great Expectations: MicroRNA-30d and Cardiac Resynchronization Therapy. Circulation, in press. http://dx.doi.org/10.1161/CIRCULATIONAHA.115.017176
|
[47]
|
Das, S. and Halushka, M.K. (2015) Extracellular Vesicle microRNA Transfer in Cardiovascular Disease. Cardiovascular pathology: The Official Journal of the Society for Cardiovascular Pathology, 24, 199-206.
|
[48]
|
Naghavian, R., Ghaedi, K., Kiani-Esfahani, A., Ganjalikhani-Hakemi, M., Etemadifar, M. and Nasr-Esfahani, M.H. (2015) miR-141 and miR-200a, Revelation of New Possible Players in Modulation of Th17/Treg Differentiation and Pathogenesis of Multiple Sclerosis. PLoS ONE, 10, e0124555. http://dx.doi.org/10.1371/journal.pone.0124555
|
[49]
|
Schaefer, J.S., Attumi, T., Opekun, A.R., Abraham, B., Hou, J., Shelby, H., Graham, D.Y., Streckfus, C. and Klein, J.R. (2015) MicroRNA Signatures Differentiate Crohn’s Disease from Ulcerative Colitis. BMC Immunology, 16, 5. http://dx.doi.org/10.1186/s12865-015-0069-0
|
[50]
|
Tili, E., Michaille, J.J., Costinean, S. and Croce, C.M. (2008) MicroRNAs, the Immune System and Rheumatic Disease. Nature Clinical Practice Rheumatology, 4, 534-541. http://dx.doi.org/10.1038/ncprheum0885
|
[51]
|
Bahn, J.H., Zhang, Q., Li, F., Chan, T.M., Lin, X., Kim, Y., Wong, D.T. and Xiao, X. (2015) The Landscape of microRNA, Piwi-Interacting RNA, and Circular RNA in Human Saliva. Clinical Chemistry, 61, 221-230. http://dx.doi.org/10.1373/clinchem.2014.230433
|