Dr. Meng Ma

Mount Sinai Genomics, Inc. d/b/a Sema4

Icahn School of Medicine at Mount Sinai, New York, USA

Email: mengma2@gmail.com, meng.ma@sema4.com

Qualifications

2008 Ph.D., University of Science and Technology of China, China

2005 M.Sc., Anhui University, China

2000 B.Sc., Anhui University, China

Publications (Selected)

1. Hang P., Shi M., Long Q., Li H., Zhao H., Ma M. Integrating Multi-scale Gene Features for Cancer Diagnosis. In: Zhou J. et al. (eds) Biometric Recognition. CCBR 2018. Lecture Notes in Computer Science, Vol 10996. Springer, Cham.
2. Shuyu D. Li, Meng Ma, Hui Li, Aneta Waluszko, Tatyana Sidorenko, Eric E. Schadt, David Y. Zhang, Rong Chen, Fei Ye, Cancer gene profiling in non-small cell lung cancers reveals activating mutations in JAK2 and JAK3 with therapeutic implications, Genome Medicine, 2017, 9: 89.
3. Meng Ma, Changchang Wang, Eric Shart, Shuyu Dan Li, Rong Chen, Identify cancer driver genes through shared Mendelian disease pathogenic variants and cancer somatic mutations, Pacific Symposium on Biocomputing, 2017, 22: 473-484.
4. Peng Liu, Yilin Ping, Meng Ma, Demao Zhang, Connie Liu, Samir Zaidi, Song Gao, Yaoting Ji, Feng Lou, Fanyuan Yu, Ping Lu, Agnes Stachnik, Mingru Bai, Chengguo Wei, Liaoran Zhang, Ke Wang, Rong Chen, Maria New, David W. Rowe, Tony Yuen, Li Sun, and Mone Zaidi, Anabolic actions of Notch on mature bone, Proceedings of the National Academy of Sciences, 2016: 201603399.
5. Meng Ma, Ying Ru, ling-shiang Chuang, Nai-yun Hsu, Lisong Shi, Joerg Hakenberg, Weiyi Cheng, Andrew Uzilov, Wei Ding, Benjamin S. Glicksberg, Rong Chen, Disease-associated variants in different categories of disease located in distinct regulatory elements. BMC Genomics, 2015, 16(Suppl8): S3.
6. Menjun Shi, Haifeng Zhao., Hong Chen, Meng Ma, Application of shift sequential patterns to analyzing regulatory elements within human genome, Genomics and Applied Biology, 2017, 12.
7. Hong Chen, Haifeng Zhao, Changchang Wang, Menjun Shi, Meng Ma, Study on modelling promoter sequence with high conservation, Genomics and Applied Biology, 2017,11: 4579-4584.
8. Yongshang Sun, Haifeng Zhao, Shuyu Dan Li, Meng Ma, Rong Chen, Applying Sequential Pattern Mining to Study Gene Splice Sites, Journal of Data Acquisition and Processing, 2016, 31(5): 1010-1019.
9. Glicksberg BS, Li L, Badgeley MA, Shameer K, Kosoy R, Beckmann ND, Pho N, Hakenberg J, Ma M, Ayers KL, Hoffman GE. Comparative analyses of population-scale phenomic data in electronic medical records reveal race-specific disease networks. Bioinformatics, 2016, 32(12): i101-10.
10. Wang JL, Liao J, Zhang JL, Cheng WY, Hakenberg J, Ma M, Webb BD, Ramasamudram-chakravarthi R, Karger L, Mehta L, Kornreich R, Diaz GA, Li SY, Edelmann L and Chen R. ClinLabGeneticist: a tool for clinical management of genetic variants from whole exome sequencing in clinical genetic laboratories. Genome Medicine, 2015, 7: 7 7. doi: 10.1186/s13073-015-0207-6
11. Menon MC, Chuang PY, Li Z, Wei C, Zhang W, Luan Y, Yi Z, Xiong H, Woytovich C, Greene I, Overbey J, Rosales I, Bagiella E, Chen R, Ma M, Li L, Ding W, Djamali A, Saminego M, O’Connell PJ, Gallon L, Colvin R, Schroppel B, He JC, Murphy B.Intronic locus determines SHROOM3 expression and potentiates renal allograft fibrosis. Journal of Clinical Investigation, 2015, 125(1): 208-221.
12. Sheng Yao, Longshu Li, Meng Ma, Upper and Lower Approximations of Rough Sets Induced by Matrix Transformation, International Review on Computers and Software, 2012, 7(5): 2696-2702.
13. Yang Wang, Meng Ma, Xinshu Xiao, Zefeng Wang, Intronic splicing enhancers, cognate splicing factors and context dependent regulation rules, Nature Structural & Molecular Biology, 2012, 19(10): 1044-1052.
14. Yang Wang, Xinshu Xiao, Jianming Zhang, Rajarshi Choudhury, Alex Robertson, Kai Li, Meng Ma, Christopher B Burge, Zefeng Wang, A complex network of factors with overlapping affinities represses splicing through intronic elements, Nature Structural & Molecular Biology, 2012. doi: 10.1038/nsmb.2459.
15. Meng Ma, Yang Wang, Using Computational Methods to Identify Genomic Features that define Intron Retention, Computer Engineering and Application, 2012, 48(28): 36-41.
16. Meng Ma, Yang Wang, Application of Sequential Feature to Analyzing Gene Splicing Signals, Computer Engineering and Application, 2012, 48(27): 180-185.
17. Shuangping Chen, Kai Han, Meng Ma, Xufa Wang, Symbolic Computation Solution to Invariant Probability Distribution for Chaotic Mapping, Mathematics in Practice and Theory, 2010, 40(6): 171-177.