TITLE:
Molecular Dynamics Study of Collagen Fibrils: Relation between Mechanical Properties and Molecular Chirality
AUTHORS:
Ken-Ichi Saitoh, Tomohiro Sato, Masanori Takuma, Yoshimasa Takahashi
KEYWORDS:
Collagen, Molecular Dynamics, Coarse-Graining, All-Atom Modeling, Mechanical Properties
JOURNAL NAME:
Journal of Biomaterials and Nanobiotechnology,
Vol.11 No.4,
September
30,
2020
ABSTRACT: Collagen is a basic biopolymer usually found in animal bodies, but its mechanical property and behavior are not sufficiently understood so as to apply to effective regenerative medicine and so on. Since the collagen material is composed of many hierarchical structures from atomistic level to tissue or organ level, we need to well understand fundamental and atomistic mechanism of the collagen in mechanical response. First, we approach at exactly atomistic level by using all-atom modeling of tropocollagen (TC) molecule, which is a basic structural unit of the collagen. We perform molecular dynamics (MD) simulations concerning tensile loading of a single TC model. The main nature of elastic (often superelastic) behavior and the dependency on temperature and size are discussed. Then, to aim at coarse-graining of atomic configuration into some bundle structure of TC molecules (TC fibril), as a model of higher collagen structure, we construct a kind of mesoscopic model by adopting a simulation framework of beads-spring model which is ordinarily used in polymer simulation. Tensile or compression simulation to the fibril model reveals that the dependency of yield or buckling limit on the number of TCs in the model. Also, we compare the models with various molecular orientations in winding process of initial spiral of TC. The results are analyzed geometrically and it shows that characteristic orientational change of molecules increases or decreases depending on the direction and magnitude of longitudinal strain.