Winter Wheat Crop Height Estimation Using Small Unmanned Aerial System (sUAS)

Deploying the small Unmanned Aerial System (sUAS) for data collection of high-resolution images is a big potential in determining crop physiological parameters. The advantage of using sUAS technology is the ability to acquire a high-resolution orthophoto and a 3D Model which is highly suitable for plant height monitoring. Plant height estimation has a big impact in the growth and development of wheat because it is essential for obtaining biomass, which is a factor for higher crop yield. Plant height is an indicator of high yield estimation and it correlates to biomass, nitrogen content, and other plant growth parameters. The study is aimed to determine an accurate height of wheat using the sUAS generated Digital Surface Model (DSM). A high-resolution imagery between 1.0 - 1.2 cm/pixel was obtained from a 35 m altitude with area coverage of 1.01 hectares. The DSM and orthophoto were generated from the sUAS, and the computed wheat heights were derived from the difference of Digital Elevation Model (DEM) and DSM data. Field measurement using steel tape was done for ground truth. The sUAS-based wheat height data were evaluated using the ground truth of 66 wheat-rows by applying correlation and linear regression analysis. Datasets were collected from three different flight campaigns (March 2018-May 2018). The sUAS-based wheat height data were significantly correlated, obtaining the result of R 2 = 0.988, R 2 = 0.996 and R 2 = 0.944 for the month of March,


Introduction
Wheat (Triticum aestivum L. em Thell.) is the first important and strategic cereal crop for most of the world's population. It is the most important staple food of about two billion people (36% of the world population) in different corners of the world. World-wide, wheat provides nearly 55% of carbohydrates and 20% of the food calories consumed globally [1]. It exceeds in land and production compared to other grain crop (including rice, maize, etc.) and is, therefore, the most important cereal grain crop of the world. For monitoring of the wheat growth, the height of the wheat is one of the important parameters. The monitoring of the height changes at different times, allows agronomists and breeders to determine the health and growth of wheat. Plant height information and spatial distribution are valuable in the classification of crop features for precision agriculture [2]- [7]. It is an important parameter that can provide indications on the growth rate and health of plants, high crop yield estimation, proper crop monitoring, and ecological research in regional and global scales [8]- [13]. Moreover, plant height is an important factor for crop management and harvesting processes like crop yield predictions, precise fertilizer application, pesticide application and a key variable in determining yield potential [14] [15] [16] and in modeling yield losses from lodging [17] [18].
Remote sensing technology such as the sUAS is a technological advancement in imagery acquisition for monitoring plants. Extensive agricultural studies have used multi-rotor and fixed wing sUAS platforms to carry various types of miniaturized sensors to effectively perform crop monitoring tasks under a variety of circumstances [19] [20] [21]. It has been demonstrated that sUAS platforms offer a unique opportunity to develop a variety of precision agriculture applications with a focus on assessing crop growth, vegetation and health status [22] [23] [24] [25]. Data collection with sUAS fills a gap on the observational scale in remote sensing by delivering high spatial and temporal resolution data that is required in crop growth monitoring. Biophysical parameters such as plant height and biomass are monitored to describe crop growth and serve as an indicator for the final crop yield [26].
The UAS can obtain high-resolution images with higher temporal, spatial and ground resolution with as compared to satellite images. Small-sized remote sensing sensors can be mounted on sUAS, which makes sUAS platforms increasingly popular in agricultural applications [27] [28]. The use of sUAS in agricultural and environmental applications has numerous advantages compared with conventional aerial vehicles, including lower cost, weight, and flight speed and flight altitude [28]. With very high-resolution imagery DSMs generated from sUAS photogrammetry have become common in several research areas, including landslide analysis in geology [29].
Plant height relies on the development of very high-resolution digital models to be able to identify and retrieve the height of each plant. High-resolution imagery is a standard methodology used for the generation of DSM [30]. DSM data have been used for estimating crop height and other growth parameters [6]. DSM depends on the quality of the UAV images and the ease of detecting such points, which could be improved by optimizing the values of image contrast, saturation and brightness [31]. Previous studies show the applicability of a very high-resolution DSM and orthoimage mosaics with high spatial and temporal resolution [28] [31] [32] [33] for environmental monitoring [34], and tree crown height quantification [30].
Although, there were a lot of researches about height estimation using DSM the method or process of calculating the height of a crop is not straightforward and entails manipulation of data to derive an accurate height of the plants.
The objective of this study is to determine the height of wheat with the sUAS generated DSM and DEM. This paper demonstrates the methods to test the accuracy of deter-mining wheat height using a sUAS with the validation of field height measurement.

Study Area
In this study, the data collection was carried out during the months of March 14, April 11, and May 9 of 2018 at the University of Florida, particularly the University of Florida's Institute of Food and Agricultural Sciences (UF/IFAS), Quincy, Florida (30˚32'46.3"N, 84˚35'40.0"W) as shown in Figure 1. The wheat crop area is 1.01 hectare as shown in Figure 2. The varieties of wheat planted were Grazer Pro Wheat, Grazer Max Wheat, and Maxie Wheat. Grazer Pro Wheat has an approximate observed height of 11 inches, Grazer Max Wheat has an approximate observed height of 13 inches, while Maxie Wheat has an approximate observed height of 12 inches. These varieties of wheat are planted in autumn to germinate and develop into young plants that remain in the vegetative phase during the winter and resume growth in early spring. These three varieties usually are planted from September to November and harvested in the summer or early autumn of the following year.
The sUAS imagery and field measurements were taken on three separate times: March 14, 2018 (Boot stage), April 11, 2018 (Flowering Stage) and May 9, 2018 (Ripening Stage) as shown in Figure 2. The weather for the flying flight date is shown in Table 1.

Unmanned Aerial System
The sUAS used in this study is an Inspire 2 (Da Jiang Innovations, Shenzhen, China). The sUAS is a multi-rotor type with four retractable propellers, and the frame consists of a magnesium aluminum composite shell with a carbon fiber   Figure 3. It has a dual self-heating battery to provide redundancy. This type of sUAS is specifically designed for filmmaking. The camera used for normal imagery is the X4S (Da Jiang Innovations, Shenzhen, China) Camera from the same manufacturer. Aside from the X4S camera, there were three different multispectral sensors attached to the sUAS during the flight campaign, modified Canon Camera Elph130IS (Canon, One Canon Park, NY, USA), MAPIR Survey2 (Peau Productions, San Diego, CA, USA), and Parrot Sequoia (Micasense Inc., Seattle, WA, USA). A carbon-fiber mount was created for these three different multispectral sensors to hold all the sensors, including the battery, for the Parrot Sequoia as shown in Figure 4. The multispectral data were used for other purposes not related to this project.

Field Measurement for Validation
There were sixty-six plant rows of wheat which are of different heights. There were rows that have the same height which made the plants' measurement easier. Measurements were taken for each height of wheat found in the area. Crop height was measured using a steel tape as shown in Figure 5.     load (sensors). A forward and side overlap of 80% and 70% respectively were used for the same flight. The set of sUAS aerial images was processed to create an orthophoto image of each of multispectral sensors using Agisoft Photoscan Professional Software (Agisoft LLC, St. Petersburg, Russia). This automatic workflow process involved aligning images, building a dense cloud, mesh, and generating an orthophoto and DSM as shown in Figure 6. The resulting images (orthophoto and DSM) are shown in Figure 7. These images have been calibrated using the different calibration panel provided by the manufacturer reflected in Figure 8. Shown in Table 2 are the acquisition details of points and images.

Statistic Analysis
The method used for the analysis of the data obtained from sUAS data and field data of wheat height is linear regression. The relationships between the two data gathered were shown in Figures 10-12.

sUAS-Based Height Estimation
The sUAS-based RGB imaging was able to obtain two types of models, the DEM, which is the ground elevation, and the DSM, which is the surface vegetation. The DEM and DTM represent the spatial distribution of terrain attributes [35]. DEMs are a type of raster GIS layer. In a DEM, each cell of the raster GIS layer has a value corresponding to its elevation (z-values at regularly spaced intervals). DEM data files contain the elevation of the terrain over a specified area, usually at a fixed grid interval over the Bare Earth. A DTM can be described as a three-dimensional representation of a terrain surface consisting of X, Y, Z coordinates stored in digital form. It includes not only heights and elevations, but other geographic elements and natural features such as rivers, ridge lines, etc. A DTM is   a DEM that has been augmented by elements such as break lines and observations other than the original data to correct for artifacts produced by using only the original data. The DSM represents the MSL elevations of the reflective surfaces of trees, buildings, and other features elevated above the Bare Earth. These models are important to determine plant height. Plant height can be obtained by subtracting DEM from DSM [36] [37] as shown in Equation (1). The constant (k) was used to address a small error which most likely caused the software used during stitching. Stitch images are prone to anomalies when the two images are combined and create a blurred area on where the two images are stitched. The calculated k was based on 30% of the dataset.

Height Accuracy
Data gathering and monitoring were taken in three months as shown in Figure   9.

Conclusions
This study is to determine the height of wheat with the sUAS generated DSM and DEM, specifically to demonstrate the methods to test the accuracy of determining wheat height using a sUAS with the validation of field height measurement. Three field measurements were taken in the course of the study (March-May 2018). Due to unforeseen circumstances (weather, e.g. heavy rain and Agricultural Sciences  strong winds) in May 2018, lodging occurred to some of the areas where the study was conducted. Results showed that the calculated height from sUAS from the measured height was highly correlated (R 2 = 0.988, R 2 = 0.996, and R 2 = 0.944) for the three months. The p-value results indicate that sUAS-based wheat height is significantly correlated with the ground truth data. The results showed that sUAS imagery is an effective alternative method to determine the plant height of winter wheat. Though problems with nature, such as heavy rains and strong winds were encountered, which affects plant height measurements because of the lodging of wheat; the results still show relatively high accuracy. Future work will focus on the determination of the root cause of the small error calculation. Another source for this error might be on the camera itself.