Molecular Phylogeny Determined Using Chloroplast DNA Inferred a New Phylogenetic Relationship of Rorippa aquatica (Eaton) EJ Palmer & Steyermark (Brassicaceae)—Lake Cress

Abstract

North American lake cress, Rorippa aquatica (Eaton) EJ Palmer & Steyermark (Brassicaceae), is listed as an endangered or threatened species. Lake cress shows heterophyllic changes in leaf form in response to the surrounding environment. Therefore, this species has received considerable attention from ecological and morphological perspectives. However, its phylogenetic position and taxonomic status have long been a subject of debate. To analyze the phylogenetic relationship of lake cress, we investigated chloroplast DNA sequences from 17 plant species. The results of phylogenetic reconstruction performed using trnL intron, trnG (GCC)-trnM (CAU), and psbC-trnS (UGA) indicated that lake cress is a member of Rorippa. Moreover, we found that the chromosome number of lake cress is 2n = 30. This result indicated that lake cress might have originated from aneuploidy of triploid species or via intergeneric crossing. Taken together, our results suggest an affinity between lake cress and Rorippa at the molecular level, indicating that lake cress should be treated as Rorippa aquatica (Eaton) EJ Palmer & Steyermark.

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H. Nakayama, K. Fukushima, T. Fukuda, J. Yokoyama and S. Kimura, "Molecular Phylogeny Determined Using Chloroplast DNA Inferred a New Phylogenetic Relationship of Rorippa aquatica (Eaton) EJ Palmer & Steyermark (Brassicaceae)—Lake Cress," American Journal of Plant Sciences, Vol. 5 No. 1, 2014, pp. 48-54. doi: 10.4236/ajps.2014.51008.

Conflicts of Interest

The authors declare no conflicts of interest.

References

[1] C. D. Larue, “Regeneration in Radicula aquatica,” Michigan Academician, Vol. 28, 1943, pp. 51-61.
[2] J. D. Gabel and D. H. Les, “Neobeckia aquatica Eaton (Greene) North American Lake Cress,” New England Plant Conservation Program, Conservation and Research Plan, 2000, pp. 1-31.
[3] The Nature Conservancy, “Element Stewardship Abstract for Armoracia lacustris,” Arlington, Virginia, 1995, pp. 1-14.
[4] R. L. Stuckey, “Armoracia aquatica Disappeared from Central Portion of Its Range,” In: R. L. Stuckey, Ed., Aquatic Plants Reference Manual, Complied Publication Series, Columbus, 1987, p. 231.
[5] D. H. Les, G. J. Anderson and M. A. Cleland, “Sterility in North American Lake Cress, Neobeckia aquatica (Brassicaceae): Inferences from Chromosome Number,” Rhodora, Vol. 97, 1995, pp. 185-200.
[6] USDA Forest Service, “Rorippa aquatica (Eaton) E. J. Palmer & Steyermark (Lake Cress),” 2005, pp. 1-32.
[7] N. C. Fassett, “A manual of Aquatic Plants,” The University of Wisconsin Press, Madison, 1930, p. 235.
[8] H. Nakayama, N. Nakayama, A. Nakamasu, N. R. Sinha and S. Kimura, “Toward Elucidating the Mechanisms that Regulate Heterophylly,” Plant Morphology, Vol. 24, 2012, pp. 57-63. http://dx.doi.org/10.5685/plmorphol.24.57
[9] A. Arber, “Water Plants: A Study of Aquatic Angiosperms,” Cambridge University Press, London, 1920.
[10] D. Wanke, “The ABA-Mediated Switch between Submersed and Emersed Life-Styles in Aquatic Macrophytes,” Journal of Plant Research, Vol. 124, 2011, pp. 467-475.
http://dx.doi.org/10.1007/s10265-011-0434-x
[11] D. H. Les, “Molecular Systematics and Taxonomy of Lake Cress (Neobeckia aquatica; Brassicaceae), an Imperiled Aquatic Mustard,” Aquatic Botany, Vol. 49, 1994, pp. 149-165. http://dx.doi.org/10.1016/0304-3770(94)90035-3
[12] A. Eaton, “Manual of Botany for North America,” 3rd Edition, Oliver Steele, New York, 1822.
[13] A. Eaton, “Manual of Botany for North America,” 3rd Edition, Oliver Steele, New York, 1829.
[14] E. J. Palmer and J. A. Steyermark, “An Annotated Catalogue of the Flowering Plants of Missouri,” Annals of the Missouri Botanical Garden, Vol. 22, 1935, p. 550.
http://dx.doi.org/10.2307/2394215
[15] I. A. Al-Shehbaz and V. Bates, “Armoracia lacustris (Brassicaseae), the Correct Name for the North American Lake Cress,” Journal of the Arnold Arboretum, Vol. 68, 1987, pp. 357-359.
[16] E. L. Greene, “Neobeckia aquatica,” Pittonia, Vol. 3, 1896, p. 95.
[17] O. Appel and A. Al-Shehbaz, “Cruciferae,” In: K. Kubitzki, Ed., The Families and Genera of Vascular Plants, Springer Verlag, Berlin, 2003, pp. 75-174.
[18] Flora of North America Editorial Committee, “Flora of North America, North of Mexico,” Magnoliophyta: Salicaceae to Brassicaseae, Oxford University Press, New York, 2010, p. 797.
[19] P. Taberlet, L. Gielly, G. Pautou and J. Bouvet, “Universal Primers for Amplification of Three Non-Coding Regions of Chloroplast DNA,” Plant Molecular Biology, Vol. 17, 1991, pp. 1105-1109.
http://dx.doi.org/10.1007/BF00037152
[20] T. Nishizawa and Y. Watano, “Primer Pairs Suitable for PCR-SSCP Analysis of Chloroplast DNA in Angiosperms,” Journal of Phytogeography and Taxonomy, Vol. 48, 2000, pp. 63-66.
[21] J. D. Thompson, D. G. Higgins and T. J. Gibson, “CLUSTAL_W: Improving the Sensitivity of Progressive Multiple Sequence Alignment through Sequence Weighting, Position-Specific Gap Penalties and Weight Matrix Choice,” Nucleic Acids Research, Vol. 22, 1994, pp. 4673-4680.
http://dx.doi.org/10.1093/nar/22.22.4673
[22] N. Saitou and M. Nei, “The Neighbor-Joining Method: A New Method for Reconstructing Phylogenetic Trees,” Molecular Biology and Evolution, Vol. 4, 1987, pp. 406-425.
[23] K. Tamura and M. Nei, “Estimation of the Number of Nucleotide Substitutions in the Control Region of Mitochondrial DNA in Humans and Chimpanzees,” Molecular Biology and Evolution, Vol. 10, 1993, pp. 512-526.
[24] K. Tamura, D. Peterson, N. Peterson, G. Stecher, M. Nei and S. Kumar, “MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods,” Molecular Biology and Evolution, Vol. 28, 2011, pp. 2731-2739.
http://dx.doi.org/10.1093/molbev/msr121
[25] J. Felsenstein, “Confidence Limits on Phylogenies: An Approach Using the Bootstrap,” Evolution, Vol. 39, 1985, pp. 783-791. http://dx.doi.org/10.2307/2408678
[26] K. Tamura, M. Nei and S. Kumar, “Prospects for Inferring Very Large Phylogenies by Using the Neighbor-Joining Method,” Proceedings of the National Academy of Sciences (USA), Vol. 101, 2004, pp. 11030-11035.
http://dx.doi.org/10.1073/pnas.0404206101
[27] T. H. Jukes and C. R. Cantor, “Evolution of Protein Molecules,” In: H. N. Munro, Ed., Mammalian Protein Metabolism, Academic Press, New York, 1969, pp. 21-132.
http://dx.doi.org/10.1016/B978-1-4832-3211-9.50009-7
[28] Flora of North America Editorial Committee, “Flora of North America, North of Mexico,” Magnoliophyta: Salicaceae to Brassicaseae, Oxford University Press, New York, 2010, p. 503.
[29] Flora of North America Editorial Committee, “Flora of North America, North of Mexico,” Magnoliophyta: Salicaceae to Brassicaseae, Oxford University Press, New York, 2010, p. 497.
[30] A. D. Bradshaw, “Evolutionary Significance of Phenotypic Plasticity in Plants,” Advances in Genetics, Vol. 13, 1965, pp. 115-155.
http://dx.doi.org/10.1016/S0065-2660(08)60048-6
[31] R. C. Rollins, “Chromosome Numbers of Cruciferae,” Contributions from the Gray Herbarium of Harvard University, Vol. 197, 1966, pp. 43-65.
[32] T. Tateoka, “Chromosome Polymorphism of the Poa macrocalyx Complex in Hokkaido,” The Botanical Magazine Tokyo, Vol. 93, 1980, pp. 221-235.
http://dx.doi.org/10.1007/BF02489324
[33] V. E. Grant, “Plant Speciation,” 2nd Edition, Columbia University Press, New York, 1981.
[34] P. K. Holmgren, N. H. Holmgren and L. C. Barnett, “Index Herbarium,” Part I: The Herbaria of the World,” 8th Edition, International Association for Plant Taxonomy, New York Botanical Garden, New York, 1990.

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