PHYLIP-GUI-Tool (PHYGUI): adapting the functions of the graphical user interface for the PHYLIP package

Yukinori Eguchi

doi:10.4236/jbise.2011.42012

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JBiSE> Vol.4 No.2, February 2011

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PHYLIP-GUI-Tool (PHYGUI): adapting the functions of the graphical user interface for the PHYLIP package

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DOI: 10.4236/jbise.2011.42012 3,517 Downloads 7,092 Views

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Yukinori Eguchi

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ABSTRACT

The PHYGUI for the PHYLIP package is a simple and user-friendly piece of software that acts such as a Windows based graphical-user-interface for the PHYLIP phylogenetic data analysis package. PHYLIP is a useful and powerful tool for phylogenetic research that is regretfully operated using a character-user-interface. Therefore, PHYLIP is difficult for beginner level users. The PHYGUI for PHYLIP adds a GUI function, which makes it a more user-friendly and powerful tool. PHYGUI runs on multiple platforms such as MS-Windows and X windows on Mac OS-X and Linux systems and is mainly operated using a mouse. The input data file and the output result data files can be viewed and edited using internal or ex-ternal text editors, which can be accessed via a button on the PHYGUI for PHYLIP.

KEYWORDS

PHYLIP; Phylogeny; GUI; Software

Conflicts of Interest

The authors declare no conflicts of interest.

Cite this paper

Eguchi, Y. (2011) PHYLIP-GUI-Tool (PHYGUI): adapting the functions of the graphical user interface for the PHYLIP package. Journal of Biomedical Science and Engineering, 4, 90-93. doi: 10.4236/jbise.2011.42012.

References

[1]	Felsenstein, J. (2005) PHYLIP (phylogeny inference package) version 3.6. Distributed by Author. Department of Genome Sciences, University of Washington, Seattle. http://evolution.genetics.washington.edu/phylip.html

[2]	Swofford, D.L. (2001) PAUP*: Phylogenetic analysis using parsimony and other methods. Sinauer Associates, Sunderland, MA. http://paup.csit.fsu.edu/

[3]	Kumar, S., Dudley, J., Nei, M. and Tamura, K. (2008) MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences. Briefings in Bioinformatics, 9, 299-306. doi:10.1093/bib/bbn017

[4]	Tamura, K., Dudley, J., Nei, M. and Kumar, S. (2007) MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology and Evolution, 24, 1596-1599. doi:10.1093/molbev/msm092