Nematodes for Soil Quality Monitoring: Results from the RMQS BioDiv Programme

Abstract

A French programme, “Réseau de mesure de la qualité des sols: biodiversité des organismes” (RMQS BioDiv) was developed in Brittany (27,000 km2 in the western part of France) as an initial assessment of soil biodiversity on a regional scale in relation to land use and pedoclimatic parameters. The nematode community assemblages were compared among the land use categories. Crops were characterised by a high abundance of bacterial-feeders, particularly opportunistic bacterial-feeders belonging to Rhabditidae. Meadows presented a higher total abundance of nematodes than did crops (20.6 ind·g-1 dry soil vs. 13.1 ind·g-1 dry soil), and they were mainly linked to the great abundance of plant-parasitic nematodes, particularly Meloidogyne, but with a very high heterogeneity between sampled plots. The nematodes were most abundant in forests (23.7 ind·g-1 dry soil) and presented the most structured community (SI = 82.2 in forests vs. 58.6 and 55.5 in crops and meadows, respectively). Forests had also the higher fungal component (fungal-feeders and facultative plant-feeders belonging to the Tylenchidae) leading to a significant higher part of the fungal decomposition pathway in forests than in crops. The ability of different taxonomic levels of nematode identifica- tion to discriminate among different cropping systems (i.e., continuous cropping system, crop with meadow in the rota- tion, meadow with crop in the rotation and permanent meadow) was also tested. The family level (48 families identified in these samples) was more efficient than the other taxonomic levels (86 taxa, 17 functional guilds and 6 trophic groups): best statistical significant discrimination for time spent in identification. The relation between the nematode ecological indices, the abundance of nematode trophic groups and the crop management practices were studied. The effects of fertilization, ploughing frequency, use of pesticides and management systems on ecological indices, particu- larly on the Maturity Indices, were observed.

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C. Villenave, A. Jimenez, M. Guernion, G. Pérès, D. Cluzea, T. Mateille, B. Martiny, M. Fargette and J. Tavoillot, "Nematodes for Soil Quality Monitoring: Results from the RMQS BioDiv Programme," Open Journal of Soil Science, Vol. 3 No. 1, 2013, pp. 30-45. doi: 10.4236/ojss.2013.31005.

Conflicts of Interest

The authors declare no conflicts of interest.

References

[1] UNCED, “United Nations Conference on Environment and Development Agenda 21, Rio de Janeiro,” 1992.
[2] European Commission, “Communication from the Commission to the Council, the European Parliament, the European Economic and Social Committee and the Committee of the Regions: Thematic Strategy for Soil Protection,” Vol. 231, 2006. http://ec.europa.eu/environment/soil/
[3] X. Morvan, N. P. A. Saby, D. Arrouays, C. Le Bas, R. J. A. Jones, F. G. A. Verheijen, P. H. Bellamy, M. Stephens and M. G. Kibblewhite, “Soil Monitoring in Europe: A Review of Existing Systems and Requirements for Harmonisation,” Sciences of Total Environment, Vol. 391, No. 1, 2008, pp. 1-12.
[4] A. Bispo, G. Pérès, D. Cluzeau, U. Graefe, J. R?mbke, M. Rutgers, M. Fuchs, J. P. Sousa, R. Schulte, M. Dombos, B. Simon, A. Gal, J. Cortet, R. Chaussod, K. Ritz, R. E. Creamer, A. Winding, M. English, J. Boixadera and J. Rubio, “ENVASSO (Environmental Assessment of Soil for Monitoring) WP 5—Decline in Soil Biodiversity,” 2007.
[5] S. Krück, M. Joschko, R. Schultz-Sternberg, B. Kroschewski and J. Tessmann, “A Classi?cation Scheme for Earthworm Populations (Lumbricidae) in Cultivated Agricultural Soils in Brandenburg, Germany,” Journal of Plant Nutrition and Soil Science, Vol. 169, No. 5, 2006, pp. 651-660.
[6] D. Cluzeau, G. Pérès, M. Guernion, R. Chaussod, J. Cortet, M. Fargette, F. Martin-Laurent, T. Mateille, C. Pernin, J.-F. Ponge, N. Ruiz-Camacho, C. Villenave, L. Rougé, V. Mercier, A. Bellido, M. Cannavacciuolo, D. Piron, D. Arrouays, L. Boulonne, C. Jolivet, P. Lavelle, E. Velasquez, O. Plantard, C. Walter, B. Foucaud-Lemercier, S. Tico, J.-L. Giteau and A. Bispo, “Integrating Biodiversity in Soil Quality Monitoring Networks: Example of the Pilot Programme at the Regional Scale, the ‘RMQS BioDiv’ (Intégration de la Biodiversité des Sols Dans les réSeaux de Surveillance de la Qualité des Sols: Exemple du Programme-Pilote à L'éChelle Régionale, le RMQS BioDiv),” Study and Soil Management (Etude et Gestion des Sols), Vol. 16, No. 3-4, 2009, pp. 187-201.
[7] M. Rutgers, A. J. Schouten, J. Bloem, Eekeren van N. J. M, R. G. M. de Goede, G. A. J. M. Jagers op Akkerhuis, A. Van der Wal, C. Mulder, L. Brussaard and A. M. Breure, “Biological Measurements in a Nationwide Soil Monitoring Network,” European Journal of Soil Science, Vol. 60, No. 5, 2009, pp. 820-832.
[8] M. G. Paoletti, “Using Bioindicators Based on Biodiversity to Assess Landscape Sustainability,” Agriculture, Ecosystems & Environment, Vol. 74, No. 1-3, 1999, pp. 1-18.
[9] T. Bongers and H. Ferris, “Nematode Community Structure as a Bioindicator in Environmental Monitoring,” Trends in Ecology and Evolution, Vol. 14, No. 6, 1999, pp. 224-228. doi:10.1016/S0169-5347(98)01583-3
[10] J. Cortet, A. G. De Vauflery, N. P. Balaguer, L. Gomot, C. Texier and D. Cluzeau, “The Use of Invertebrate Soil Fauna in Monitoring Pollutant Effects,” European Journal of Soil Biology, Vol. 35, No. 3, 1999, pp. 115-134. doi:10.1016/S1164-5563(00)00116-3
[11] L. Brussaard, “Soil Biodiversity for Agricultural Sustainability,” Agriculture, Ecosystems and Environment, Vol. 121, No. 3, 2007, pp. 233-244.
[12] A. Bispo, D. Cluzeau, R. E. Creamer, U. Graefe, P. H. Krogh, J. P. Sousa, G. Peres, M. Rutgers, A. Winding and J. R?mbke, “Indicators for Monitoring Soil Biodiversity,” Integrated Environment Assessment Management, Vol. 5, No. 4, 2009, pp. 717-719.
[13] D. Cluzeau, M. Guernion, R. Chaussod, F. Martin-Laurent, C. Villenave, J. Cortet, N. Ruiz-Camacho, C. Pernin, T. Mateille, L. Philippot, A. Bellido, L. Rougé, D. Arrouays, A. Bispo and G. Pérès, “Integration of Biodiversity in Soil Quality Monitoring: Baselines for Microbial and Soil Fauna Parameters for Different Land-Use Types,” European Journal of Soil Biology, Vol. 49, 2012, pp. 63-72.
[14] D. Arrouays, C. Jolivet, L. Boulonne, G. Bodineau, N. P. A. Saby and E. Grolleau, “A New Initiative in France: A Multi-Institutional Soil Quality Monitoring Network,” Comptes Rendus de l’Academie d’Agriculture de France, Vol. 88, No. 2, 2002, pp. 93-103.
[15] N. P. A. Saby, J. Thioulouse, C. Jolivet, C. Ratié, L. Boulonne, A. Bispo and D. Arrouays, “Multivariate Analysis of the Spatial Patterns of 8 Trace Elements Using the French Soil Monitoring Network Data,” Sciences of Total Environment, Vol. 407, No. 21, 2009, pp. 5644-5652.
[16] J. W. Seinhorst, “Modifications of the Elutriation Method for Extracting Nematodes from Soil,” Nematologica, Vol. 8, No. 2, 1962, pp. 117-128.
[17] ISO 23611-4, “Soil Quality—Sampling of Soil Invertebrates. Part 4: Sampling, Extraction and Determination of Soil-Inhabiting Nematodes,” Geneva, 2007.
[18] I. Andrassy, “Klasse Nematoda (Ordnungen Monhysterida, Desmoscolecida, Araeolaimida, Chromadorida, Rhabditida),” Akademie-Verlag, Berlin, 1984.
[19] T. Bongers, “Nematodes from Netherlands (De Nematoden van Nederland),” Koninklijke Nederlandse Natuurhistorische Vereniging, Utrecht, 1994.
[20] M. R. Siddiqi, “Tylenchida. Parasites of Plants and Insects,” CABI, 2000. doi:10.1079/9780851992020.0000
[21] G. W. Yeates, T. Bongers, R. G. M. de Goede, D. W. Freckman and S. S. Georgieva, “Feeding Habits in Soil Nematode Families and Genera—An Outline for Soil Ecologists,” Journal of Nematology, Vol. 25, No. 3, 1993, pp. 315-331.
[22] T. Bongers, “The Maturity Index: An Ecological Measure of Environmental Disturbance Based on Nematode Species Composition,” Oecologia, Vol. 83, No. 1, 1990, pp. 14-19.
[23] H. Ferris, T. Bongers and R. de Goede, “A Framework for Soil Food Web Diagnostics: Extension of the Nematode Faunal Analysis Concept,” Applied Soil Ecology, Vol. 18, No. 1, 2001, pp. 13-29. doi:10.1016/S0929-1393(01)00152-4
[24] G. W. Yeates, “Nematodes as Soil Indicators: Functional and Biodiversity Aspects,” Biology and Fertility of Soils, Vol. 37, No. 4, 2003, pp. 199-210.
[25] J. B. Kruskal and M. Wish, “Multidimensional Scaling. on Quantitative Applications in the Social Sciences,” Sage Publications, London., 1978.
[26] M. J. Anderson, R. N. Gorley and K. R. Clarke, “Permanova+ for Primer. Guide to Software and Statistical Methods,” PRIMER-E, Ltd., Plymouth, 2008.
[27] C. Villenave and P. Cadet, “Influence of Soil Organic Matter and Ion Concentration on Some Senegalese Plant-Parasitic Nematodes,” European Journal of Soil Biology, Vol. 35, No. 4, 1999, pp. 189-197. doi:10.1016/S1164-5563(10)70005-4
[28] G. W. Yeates, R. D. Bardgett, R. Cook, P. J. Hobbs, P. J. Bowling and J. F. Potter, “Faunal and Microbial Diversity in Three Welsh Grassland Soils under Conventional and Organic Management Regimes,” Journal of Applied Ecology, Vol. 34, No. 2, 1997, pp. 453-470. doi:10.2307/2404890
[29] C. Villenave, K. Ekschmitt, S. Nazaret and T. Bongers, “Interactions between Nematodes and Microbial Communities in a Tropical Soil Following Manipulation of the Soil Food Web,” Soil Biology & Biochemistry, Vol., No. 36, 2004, pp. 2033-2043.
[30] C. Villenave, A. O. Ba and B. Rabary, “Analysis of Soil Biological Functionning by the Study of Nematofauna: Direct Seeding Versus Tillage in the Highlands near Antsirabe (Madagascar) (Analyse du Fonctionnement Biologique du sol Par L’étude de la Nematofaune: Semis Direct Versus Labour sur les Hautes Terres près d’Antsirabé (Madagascar)),” Study and Soil Management, Vol. 16, No. 3-4, 2009, pp. 369-378.
[31] U. Irshad, C. Villenave, A. Brauman and C. Plassard, “Grazing by Nematodes on Rhizosphere Bacteria Enhances Nitrate and Phosphorus Availability to Pinus Pinaster Seedlings,” Soil Biology & Biochemistry, Vol. 43, No. 10, 2011, pp. 2121-2126.
[32] N. van Eekeren, L. Bommele, J. Bloem, T. Schouten, M. Rutgers, R. G. M. deGoede, D. Reheul and L. Brussaard, “Soil Biological Quality after 36 Years of Ley-Arable Cropping, Permanent Grassland and Permanent Arable Cropping,” Applied Soil Ecology, Vol. 40, No. 3, 2008, pp. 432-446. doi:10.1016/j.apsoil.2008.06.010
[33] L. Hanel, “Secondary Successional Stages of Soil Nematodes in Cambisols of South Bohemia,” Nematologica, Vol. 41, No. 1-5, 1995, pp. 197-218.
[34] L. Hanel, “Recovery of Soil Nematode Populations from Cropping Stress by Natural Secondary Succession to Meadow Land,” Applied Soil Ecology, Vol. 22, No. 3, 2003, pp. 255-270. doi:10.1016/S0929-1393(02)00152-X
[35] H. Okada and H. Haradaba, “Effects of Tillage and Fertilizer on Nematode Communities in a Japanese Soybean Field,” Applied Soil Ecology, Vol. 35, No. 3, 2007, pp. 582-598.
[36] W. Liang, Y. Lou, L. Q. S. Zhong, X. Zhang and J. Wang, “Nematode Faunal Response to Long-Term Application of Nitrogen Fertilizer and Organic Manure in Northeast China,” Soil Biology & Biochemistry, Vol. 41, No. 5, 2009, pp. 883-890.
[37] L. Hanel, “Soil Nematodes in Five Spruce Forests of the Beskydy Montains, Czech Republic,” Fundamental and Applied Nematology, Vol. 19, No. 1, 1996, pp. 15-24.
[38] L. Ruess, “Nematode Soil Faunal Analysis of Decomposition Pathways in Different Ecosystems,” Nematology, Vol. 5, No. 2, 2003, pp. 179-181. doi:10.1163/156854103767139662
[39] J. Molénat, P. Durand, C. Gascuel-Odoux, P. Davy and G. Gruau, “Mechanisms of Nitrate Transfer from Soil to Stream in an Agricultural Watershed of French Brittany,” Water Air Soil Pollution, Vol. 133, No. 1-4, 2002, pp. 161-183.
[40] D. W. Freckman and C. H. Ettema, “Assessing Nematode Communities in Agroecosystems of Varying Human Intervention,” Agriculture, Ecosystems & Environment, Vol. 45, No. 3-4, 1993, pp. 239-261.
[41] M. Vestergard, “Nematode Assemblages in the Rhizosphere of Spring Barley (Hordeum Vulgare L.) Depended on Fertilisation and Plant Growth Phase,” Pedobiologia, Vol. 48, No. 3, 2004, pp. 257-265. doi:10.1016/j.pedobi.2004.01.003
[42] G. A. Adams and D. H. Wall, “Biodiversity above and below the Surface of Soils and Sediments: Linkages and Implications for Global Change,” Bioscience, Vol. 50, No. 12, 2000, pp. 1043-1048. doi:10.1641/0006-3568(2000)050[1043:BAABTS]2.0.CO;2
[43] P. Lavelle, T. Deca?ns, A. Aubert, S. Barot, M. Blouin, F. Bureau, P. Margerie, P. Mora and J.-P. Rossi, “Soil Invertebrates and Ecosystem Services,” European Journal of Soil Biology, Vol. 42, Suppl. 1, 2006, pp. S3-S15.
[44] M. W. Trett, B. C. Urbano, S. J. Forster and S. P. Trett, “Commercial Aspects of the Use of Nematodes as Bioindicators,” In: M. J. Wilson and T. Kakouli-Duarte, (Eds), Nematodes as Environmental Indicators, CABI, Wallingford, 2009, pp. 1-44.
[45] G. W. Yeates, “Soil Nematodes in Terrestrial Ecosystems,” Journal of Nematology, Vol. 11, No. 3, 1979, pp. 213-229.
[46] T. Bongers, H. van der Meulen and G. Korthals, “Inverse Relationship between the Nematode Maturity Index and Plant Parasitic Index under Enriched Nutrient Conditions,” Applied Soil Ecology, Vol. 6, No. 2, 1997, pp. 195- 199.
[47] P. Coll, E. Le Cadre, E. Blanchart, P. Hinsinger and C. Villenave, “Organic Viticulture and Soil Quality: A LongTerm Study in Southern France,” Applied Soil Ecology, Vol. 50, No. 1, 2011, pp. 37-44.
[48] D. A. Neher, “Soil Community Composition and Ecosystem Processes—Comparing Agricultural Ecosystems with Natural Ecosystems,” Agroforestry Systems, Vol. 45, No. 1-3, 1999, pp. 159-185. doi:10.1023/A:1006299100678
[49] C. Mulder, D. De-Zwart, H. J. Van Wijnen, A. J. Schouten and A. M. Breure, “Observational and Simulated Evidence of Ecological Shifts within the Soil Nematode Community of Agroecosystems under Conventional and Organic Farming,” Functional Ecology, Vol. 17, No. 4, 2003, pp. 516-525. doi:10.1046/j.1365-2435.2003.00755.x
[50] C. Villenave, S. Saj, A.-L. Pablo, S. Sall, D. Djigal, J.-L. Chotte and M. Bonzi, “Influence of Long-Term Organic and Mineral Fertilization on Soil Nematofauna when Growing Sorghum Bicolor in Burkina Faso,” Biology and Fertility of Soils, Vol. 46, No. 7, 2010, pp. 659-670.

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