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Treuil, J.-P., A. Drogoul and J.-D. Zucker (2008). Modélisation et simulation à base d’agents: Approches particulaires, modèles à base d’agents, de la mise en pratique aux questions théoriques, Dunod.
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Zucker, J.-D. and A. Cornuejols, Eds. (2007). Actes de la conférence d'Apprentissage (CAp) 2007.Grenoble,France, PUG.
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Zucker, J.-D. and L. Saitta, Eds. (2005). Abstraction, Reformulation and Approximation, 6th International Symposium, SARA 2005. Lecture Notes in Computer Science 3607. Springer.
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Birkner, M. D., M. Courtine, K. Clément, J.-D. Zucker, M.-J. v. d. Laan and S. Dudoit (2007). Genetic mapping of complex human traits using single nucleotide polymorphisms: The ObeLinks Project. . Multiple Testing Procedures with Applications to Genomics Collection. S. D. a. M. J. v. d. Laan, Springer Verlag.
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Courtine, M., J.-D. Zucker and K. Clément (2004). Classification et caractérisation automatique des fonctions de gènes co-exprimés. Informatique pour l'analyse du transcriptome. O.Gandrillon and J. F. Boulicaut. Paris, Hermes: 252-27.
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Henegar, C., S. Taleb, D. Langin, J.-D. Zucker and K. Clément (2009). Application of ‘Omic’ strategies to Obesity Research. Peptides in Energy Balance and Obesity G. Fruhbeck, CABI: 349-367.
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Lamy, J.-B., A. Ellini, J. Nobécourt, A. Venot and J.-D. Zucker. (2010). Testing methods for decision support systems. Decision support systems. Intech. Vukovar, Croatia, InTech: 87-98.
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Mustière, S. and J.-D. Zucker (2002). Généralisation Cartographique et apprentissage automatique à partir d'exemples. Généralisation et Représentations Multiples. A. Ruas. Paris, Hermès. Chapitre 20: 353-368.
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Zucker, J.-D. (1995). Integrating Machine Learning Techniques in a Guided Discovery Tutoring Environment: MEMOCAR. Emerging Computer Technologies in Education: 189-206.
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Zucker , J.-D. (2001). Multiple instance learning and Propositionalization. Machine Learning: A Technological Roadmap. L. Saitta. Amsterdam, The Nederlands, University of Amsterdam.
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Prifti, E., J.-D. Zucker, K. Clément and C. Henegar (2010). "Interactional and functional centrality in transcriptional co-expression networks." BioInformatics 26 (24): 3083-9.
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Nadeem, S.-A., J.-d. Zucker and B. Hanczar (2010). "Accuracy-Rejection Curves (ARCs) for Comparison of Classification Methods with Reject Option." Journal of Machine Learning Research 8: 65-81.
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Mutch, D. M., T. H. Pers, M. R. Temanni, V. Pelloux, Adriana Marquez-Quiñones, J. A. M. Claus Holst, D. Babalis, M. A. v. Baak, T. Handjieva-Darlenska, A. A. Celia G Walker, W. H. Saris, D. Langin, N. Viguerie, J.-D. Zucker and a. K. Clément (2010). "A distinct adipose tissue gene expression response to caloric restriction foreshadows successful weight maintenance in obese subjects." The American Journal of Clinical Nutrition.
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Hanczar, B., C. Henegar and J.-D. Zucker (2010). "Exploring interaction measures to identify informative pairs of genes." International Journal of Bioinformatics Research and Applications 6(6): 15.
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Divoux, A., J. Tordjman, D. Lacasa, N. Veyrie, D. Hugol, A. Aissat, A. Basdevant, M. Guerre-Millo, C. Poitou, J.-D. Zucker, P. Bedossa and K. Clément (2010). "Fibrosis in human adipose tissue: composition, distribution and link with lipid metabolism and fat mass loss." Diabetes.
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Sheeren, D., Sébastien Mustière and J.-D. Zucker (2009). "A data mining approach for assessing consistency between multiple representations in spatial databases." International Journal of Geographical Information Science 23(8): 961-992.
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Much, D., J. Tordjman, V. Pelloux, B. Hanczar, C. Henegar, C. Poitou, N. Veyrie, J.-D. Zucker and K. Clément (2009). "Needle and surgical biopsy techniques differentially affect adipose tissue gene expression profiles" Am J Clin Nutr 89(1): 51-7.
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Chu, T.-Q., A. Drogoul, A. Boucher and J.-D. Zucker (2009). "Interactive Learning of Independent Experts’ Criteria for Rescue Simulations." Journal of Universal Computer Science 15(13): 2701-2725.
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Prifti, E., J.-D. Zucker, K. Clement and C. Henegar (2008). "FunNet: an integrative tool for exploring transcriptional interactions " Bioinformatics 24(22): 2636-2638.
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Lamy, J. B., A. Ellini, V. Ebrahiminia, J. D. Zucker, H. Falcoff and A. Venot (2008). "Use of the C4.5 machine learning algorithm to test a clinical guideline-based decision support system." Stud Health Technol Inform 136: 223-8.