[1]
|
Singer, M. and Berg, P. (1991) Genes & genomes – A changing perspective-. University Science Books.
|
[2]
|
Garrel, J.I. (1997) The yeast proteome handbook. Third edition, Beverly, Proteome Inc.
|
[3]
|
Velculescu, V.E., Zhang, L., Zhou, W., Vogelstein, J., Basral, M.A., Bassett, D.E.Jr., Hieter, P., Vogelstein, B. and Kinzler, K.W. (1997) Characterization of the yeast transcriptome. Cell, 88, 243-51.
|
[4]
|
Wan, X.F., VerBerkmoes, N.C., McCue, L.A., Stanek, D., Connlly, H., et al. (2004) Transcriptomic and proteomic characterization of the fur modulon in the metal- reducing bacterium Shewanella oneidensis. The Journal of Bacteriology, 186, 8385-8400.
|
[5]
|
Sakharkar, K.R., Sakharkar, M.K., Culiat, C.T., Chow, V. T. and Pervaiz, S. (2006) Functional and evolutionary analyses on expressed intronless genes in the mouse genome. FEBS Letters, 580, 1472-1478.
|
[6]
|
Karkas, J.D., Rudner, R. and Chargaff, E. (1968) Separation of B. subtilis DNA into complementary strands. II. Template functions and composition as determined by transcription by RNA polymerase. Proceedings of the National Academy of Sciences of the United States of America, 60, 915-920.
|
[7]
|
Bell, S. J., Fordyke, D. R. (1999) Accounting unit of in DNA. Journal of Theoretical Biology, 197, 51-61.
|
[8]
|
Abe, T., Kanaya, S., Kinouchi, M., Kudo, Y., Mori, H. et al. (1999) Gene classification method based on batch- learning SOM. Genome Informatics Seris, 10, 314- 315.
|
[9]
|
Baisnee, P.-F., Hampson, S. and Baldi, P. (2002) Why are complementary DNA strands symmetric? Bioinformatics, 18, 1021-1033.
|
[10]
|
Chen, L. and Zhao, H. (2005) Negative correlation between compositional symmetries and local recombination rates. Bioinformatics, 21, 3951-3958.
|
[11]
|
Albrecht-Buehler, G. (2006) Asymptotically increasing compliance of genomes with Chargaff’s second parity rules through inversions and inverted transpositions. Proceedings of the National Academy of Sciences of the United States of America, 103, 17828-17833.
|
[12]
|
Wilson, J. T., Wilson, L. B., Reddy, V. B., Cavallesco, C., Ghosh, P. K., et al. (1980) Nucleotide sequence of the coding portion of human alpha globin messenger RNA. Journal of Biological Chemistry, 255, 2807-2815.
|
[13]
|
Wada, A., Suyama, A. and Hanai, R. (1991) Phenomenological theory of GC/AT pressure on DNA base composition. Journal of Molecular Evolution, 32, 374-378.
|
[14]
|
Nakamura, Y., Itoh, T. and Martin, W. (2007) Rate and polarity of gene and fission in Oryza sativa and Arabidopsis thaliana. Molecular Biology and Evolution, 24, 110-121.
|
[15]
|
Paila, U., Kondam, R. and Ranjan, A. (2008) Genome bias influences amino acid choice: analysis of amino acid substitution and re-compilation matrices exclusive to an AT-biased genome. Nucleic Acids Research.
|
[16]
|
Voss, R.F. (1992) Evolution of long-range fractal correlation and 1/f noise in DNA base sequences. Physical Review Letters. 68, 3805-3809.
|
[17]
|
Bains, W. (1993) Local self-similarity of sequence in mammalian nuclear DNA is modulated by a 180 bp periodicity. Journal of Theoretical Biology, 161, 13-143.
|
[18]
|
Weinberger, E.D. and Stadler, P.F. (1993) Why some fitness landscape are fractal. Journal of Theoretical Biology, 163, 255-275.
|
[19]
|
Lu, X., Sun, Z., Chen, H. and Li, Y. (1998) Characterizing self-similarity in bacteria DNA sequences. Physical Review E—Statistical, 58, 3578-3584.
|
[20]
|
Takeda, M. and Nakahara, M. (2009) Structural Features of the Nucleotide Sequences of Genomes. Journal of Computer Aided Chemistry, 10, 38-52.
|
[21]
|
NCBI Genome Data Base (2009) http://www.ncbi.nlm. nih.gov/sites/entrez?db=genome
|
[22]
|
Crick, F.H. (1968) The origin of genetic code. Journal of Molecular Biology, 38, 367-379.
|
[23]
|
International Human Genome Sequencing Consortium. (2001) Initial sequencing and analysis of the human genome. Nature, 409, 860-921.
|
[24]
|
Mattick, J.S. (2004) RNA regulation: A new genetics? Nature Reviews Genetics, 5, 316-323.
|
[25]
|
Lynch, M. (2007) The frailty of adaptive hypothesis for the origins of organismal complexity. Proceedings of the National Academy of Sciences of the United States of America, 104, 8597-8604.
|
[26]
|
Takeda, M., Chen, W.-H., Saltzgaber, J. and Douglas, M.G. (1986) Nuclear genes encoding the yeast mitochondrial ATPase complex-analysis of ATP1 coding the F1-ATPase subunit and its assembly-. Journal of Biological Chemistry, 261, 15126-15133.
|
[27]
|
Takeda, M., Okushiba, T., Hayashida, T. and Gunge, N. (1994) ATP1 and ATP2, F1F0-ATPase and subunit genes of Saccharomyces cerevisiae, are respectively located on chromosome II and X. Yeast, 10, 1531-1534.
|
[28]
|
Mewes, H. W., Albermann, K., Bähr, M., Frishmann, D., Gleissner, A., et al. (1997) Overview of the yeast genome. Nature, 387 (supp), 7-65.
|
[29]
|
Dietrich, F. S., Mulligan, J., Hennessy, K., Yelton, M. A., Allen, E., et al. (1997) The nucleotide sequence of Saccharomyces cerevisiae chromosome V. Nature, 387 (supp), 78-81.
|
[30]
|
Saccharomyce Genome Database. (2009) (http://www. yeastgenome.org/).
|
[31]
|
Transfer RNA data base. (2009) (http://gtrnadb.ucsc.edu/).
|
[32]
|
Matthews, B.W. (1993) Structural and genetic analysis of protein stability. Annual Review of Biochemistry, 62, 139-160.
|
[33]
|
Kornberg, R.D. (1974) Chromatin structure: a repeating unit of histones and DNA. Science, 184, 868-871.
|
[34]
|
van Holde, K. and Zlatonova, J. (1995) Chromatin higher order structure: Chasing a mirage? Journal of Biological Chemistry, 270, 8373-8376
|