[1]
|
Baumung, R., Simianer, H. and Hoffmann, I. (2004) Genetic Diversity Studies in Farm Animals—A Survey. Journal of Animal Breeding and Genetics, 121, 361-373. http://dx.doi.org/10.1111/j.1439-0388.2004.00479.x
|
[2]
|
Soller, M., Weigend, S., Romanov, M.N., Dekkers, J.C.M. and Lamont, S.J. (2006) Strategies to Assess Structural Variation in the Chicken Genome and Its Association with Biodiversity and Biological Performances. Poultry Science, 85, 2061-2078. http://dx.doi.org/10.1093/ps/85.12.2061
|
[3]
|
Ellagra, H. (2004) Microsatellites: Simple Sequences with Complex Evolution. Nature Review Genetics, 5, 435-445.
http://dx.doi.org/10.1038/nrg1348
|
[4]
|
Muchadeyi, F.G., Wollny, C.B.A., Eding, H., Weigend, S., Makuza, S.M. and Simianer, H. (2007) Variation in Village Chicken Production Systems among Agro-Ecological Zones of Zimbabwe. Tropical Animal Health and Production, 39, 413-461. http://dx.doi.org/10.1007/s11250-007-9050-0
|
[5]
|
Toro, M.A. and Caballero, A. (2005) Characterization and Conservation of Genetic Diversity in Subdivided Populations. Philosophical Transactions of the Royal Society B: Biological Sciences, 360, 1367-1378.
http://dx.doi.org/10.1098/rstb.2005.1680
|
[6]
|
Hillel, J., Martien, A.M., Groenen, A.M., Boichard, M.T., Abraham, B., Korol, A.B., David, V., Kirzhner, V.M., Burke, T., Barre-Dirief, A., Crooijmans, R.P.M.A., Elo, K., Feldman, M.W., Paul, J., Freidlin, P.J., Mäki-Tanila, A., Oortwijn, W., Thomson, P., Vigna, A., Wimmers, K. and Weigend, S. (2003) Biodiversity of 52 Chicken Populations Assessed by Microsatellite Typing of DNA Pools. Genetic Selection Evolution, 35, 533-557.
http://dx.doi.org/10.1186/1297-9686-35-6-533
|
[7]
|
Norberg, E. and Sørensen, A.C. (2007) Inbreeding Trend and Inbreeding Depression in the Danish Populations of Texel, Shropshire, and Oxford Down. Journal of Animal Science, 85, 299-304. http://dx.doi.org/10.2527/jas.2006-257
|
[8]
|
Miglior, F., Burnside, E.B. and Hohenboken, W.D. (1994) Heterogeneity among Families of Holestien Cattle in Inbreeding Depression for Production Traits. Proceedings of the 5th WCGALP, 18, 479-482.
|
[9]
|
Rathje, T.A. (2000) Strategies to Manage Inbreeding Accumulation in Swine Breeding Company Nucleus Herds: Some Case Studies. Journal of Animal Science, 79, 1-8.
|
[10]
|
Culbertson, M.S., Mabry, J.W., Misztal, I. and Bertrand, J.K. (1997) Effect of Inbreeding and Outbreeding in Purebred and Hampshire and Duroc Swine. The Professional Animal Scientist, 13, 194-197.
|
[11]
|
Sewalem, A., Johansson, K., Wilhelmson, M. and Lillpers, K. (1999) Inbreeding and Inbreeding Depression on Reproduction and Production Traits of White Leghorn Lines Selected for Egg Production Traits. British Poultry Science, 40, 203-208. http://dx.doi.org/10.1080/00071669987601
|
[12]
|
Gómez, M.D., Valera, M., Molina, A., Gutiérrez, J.P. and Goyache, F. (2009) Assessment of Inbreeding Depression for Body Measurements in Spanish Purebred (Andalusian) Horses. Livestock Science, 122, 149-155.
http://dx.doi.org/10.1016/j.livsci.2008.08.007
|
[13]
|
Dorji, N., Daujginda, M. and Phasuk, Y. (2011) Genetic Characterization of Thai Indigenous Chickens Compared with Commercial Lines. Tropical Animal Health and Production, 43, 779-785.
http://dx.doi.org/10.1007/s11250-010-9763-3
|
[14]
|
Nidup, K. and Moran, C. (2011) Genetic Diversity of Domestic Pigs as Revealed by Microsatellites: A Mini Review. Genomics and Quantitative Genetics, 2, 5-18.
|
[15]
|
Food and Agriculture Organization/ISAG (2004) Measurement of Domestic Animal Diversity—A Review of Recent Diversity Studies. http://www.fao.org/docrep/meeting/021/j1998e.pdf
|
[16]
|
Groeneveld, L.F., Lenstra, J.A., Eding, H., Toro, M.A., Scherf, B., Pilling, D., Negrini, R., Finlay, E.K., Jianlin, H., Groeneveld, E. and Weigend, S. (2010) Genetic Diversity in Farm Animals—A Review. Animal Genetics, 41, 6-31.
http://dx.doi.org/10.1111/j.1365-2052.2010.02038.x
|
[17]
|
Nassiry, M.R., Javanmard, A. and Tohidi, R. (2009) Application of Statistical Procedures for Analysis of Genetic Diversity in Domestic Animal Populations. American Journal of Animal & Veterinary Sciences, 4, 136-141.
http://dx.doi.org/10.3844/ajavsp.2009.136.141
|
[18]
|
Tadano, R., Sekino, M., Nishibori, M. and Tsudzuki, M. (2007) Microsatellite Marker Analysis for the Genetic Relationships among Japanese Long-Tailed Chicken Breeds. Poultry Science, 86, 460-469.
http://dx.doi.org/10.1093/ps/86.3.460
|
[19]
|
Osman, S.A., Sekino, M., Nishibori, M., Kawamoto, Y., Kinoshita, K., Yamamoto, Y. and Tsudzuki, M. (2004) Genetic Variability and Relationships of Japanese Native Chickens Assessed by Means of Microsatellite Profiling Approach-Focusing on the Oh-Shamo (Japanese Large Game) and Its Related Breeds. Journal of Poultry Science, 41, 94-109.
http://dx.doi.org/10.2141/jpsa.41.94
|
[20]
|
Frankham, R., Ballou, J.D. and Briscoe, D.A. (2004) A Primer of Conservation Genetics. Cambridge University Press, London. http://dx.doi.org/10.1017/CBO9780511817359
|
[21]
|
Hanotte, O. and Jianlin, H. (2005) Genetic Characterization of Livestock Populations and Its Use in Conservation Decision-Making. The Role of Biotechnology, Turin, 5-7 March 2005, 131-136.
|
[22]
|
Toro, M.A., Fernandez, J. and Caballero, A. (2009) Molecular Characterization of Breeds and Its Use in Conservation. Livestock Science, 120, 174-195. http://dx.doi.org/10.1016/j.livsci.2008.07.003
|
[23]
|
Kalinowski, S.T. (2004) Counting Alleles with Rarefaction: Private Alleles and Hierarchical Sampling Designs. Conservation Genetic, 5, 539-543. http://dx.doi.org/10.1023/B:COGE.0000041021.91777.1a
|
[24]
|
Nei, M. (1978) Estimation of Heterozygosity and Genetic Distance from a Small Number of Individuals. Genetics, 89, 583-590.
|
[25]
|
Allendorf, F.W. (1986) Genetic Drift and the Loss of Alleles versus Heterozygosity. Zoo Biology, 5, 181-190.
http://dx.doi.org/10.1002/zoo.1430050212
|
[26]
|
Lauretto, M.S., Nakano, F., Faria Jr., S.R., Pereira, C.A.B. and Stern, J.M. (2009) A Straightforward Multiallelic Significance Test for the Hardy-Weinberg Equilibrium Law. Genetics and Molecular Biology, 32, 619-625.
http://dx.doi.org/10.1590/S1415-47572009000300028
|
[27]
|
Rousset, F. and Raymond, M. (1997) Statistical Analyses of Population Genetic Data: New Tools, Old Concept. Trends in Ecology & Evolution, 12, 313-317. http://dx.doi.org/10.1016/S0169-5347(97)01104-X
|
[28]
|
Weir, B.S. (1996) Genetic Data Analysis II: Methods for Discrete Population Genetic Data. Sinauer Associates, Inc., Sunderland.
|
[29]
|
Wright, S. (1951) The Genetical Structure of Populations. Annals of Eugenics, 15, 323-354.
http://dx.doi.org/10.1111/j.1469-1809.1949.tb02451.x
|
[30]
|
Holsinger, K.E. and Weir, B.S. (2009) Genetics in Geographically Structured Populations: Defining, Estimating and Interpreting FST. Nature Reviews Genetics, 10, 639-650. http://dx.doi.org/10.1038/nrg2611
|
[31]
|
Kalinowski, S.T. (2002) Evolutionary and Statistical Properties of Three Genetic Distances. Molecular Ecology, 11, 1263-1273. http://dx.doi.org/10.1046/j.1365-294X.2002.01520.x
|
[32]
|
Pearse, D.E. and Crandall, K.A. (2004) Beyond FST: Analysis of Population Genetic Data for Conservation. Conservation Genetics, 5, 585-602. http://dx.doi.org/10.1007/s10592-003-1863-4
|
[33]
|
Balloux, F. and Lugon-Moulin, L. (2002) The Estimation of Population Differentiation with Microsatellite Markers. Molecular Ecology, 11, 155-165. http://dx.doi.org/10.1046/j.0962-1083.2001.01436.x
|
[34]
|
Hedrick, P.W. (2005) A Standardized Genetic Differentiation Measure. Evolution, 59, 1633-1638.
http://dx.doi.org/10.1111/j.0014-3820.2005.tb01814.x
|
[35]
|
Nei, M. and Roychoudhury, A.K. (1974) Sampling Variances of Heterozygosity and Genetic Distance. Genetics, 76, 379-390.
|
[36]
|
Ruane, J. (1999) A Critical Review of the Value of Genetic Distance Studies in Conservation of Animal Genetic Resources. Animal Breeding and Genetics, 116, 317-323.
|
[37]
|
Nei, M. (1972) Genetic Distance between Populations. American Naturalist, 106, 283-292.
http://dx.doi.org/10.1086/282771
|
[38]
|
Nei, M., Tajima, F. and Tateno, Y. (1983) Accuracy of Estimated Phylogenetic Trees from Molecular Data. Journal of Molecular Evolution, 19, 153-170. http://dx.doi.org/10.1007/BF02300753
|
[39]
|
Weir, B.S. and Cockerham, C.C. (1984) Estimating F-Statistics for the Analysis of Population Structure. Evolution, 38, 1358-1370. http://dx.doi.org/10.2307/2408641
|
[40]
|
Laval, G., San Cristobal, M. and Chevalet, C. (2001) Measuring Genetic Distances between Breeds: Use of Some Distances in Various Short Term Evolution Models. Genetics Selection Evolution, 34, 481-507.
http://dx.doi.org/10.1186/1297-9686-34-4-481
|
[41]
|
Felsenstein, J. (1981) Evolutionary Trees from DNA Sequences: A Maximum Likelihood Approach. Journal of Molecular Evolution, 17, 368-376. http://dx.doi.org/10.1007/BF01734359
|
[42]
|
Nei, M. and Kumar, S. (2000) Molecular Evolution and Phylogenetics. Oxford University Press, Inc., New York.
|
[43]
|
Thorne, J.L., Kishino, H. and Felsenstein, J. (1991) An Evolutionary Model for Maximum Likelihood Alignment of DNA Sequences. Journal of Molecular Evolution, 33, 114-124. http://dx.doi.org/10.1007/BF02193625
|
[44]
|
Suhr, D.D. (2005) Principal Component Analysis vs. Exploratory Factor Analysis. SUGI 30 Proceedings, 203-230.
|
[45]
|
Price, A.L., Patterson, N.J., Plenge, R.M., Weinblatt, M.E., Shadick, N.A. and Reich, D. (2006) Principal Components Analysis Corrects for Stratification in Genome-Wide Association Studies. Nature Genetics, 38, 904-909.
http://dx.doi.org/10.1038/ng1847
|
[46]
|
Raymond, M. and Rousset, F. (1995) GENEPOP (Version 1.2): Population Genetics Software for Exact Tests and Ecumenicism. Journal of Heredity, 86, 248-249.
|
[47]
|
Rousset, F. (2008) GENEPOP’007: A Complete Reimplementation of the GENEPOP Software for Windows and Linux. Molecular Ecology Resources, 8, 103-106. http://dx.doi.org/10.1111/j.1471-8286.2007.01931.x
|