Conservation of endangered animals: From biotechnologies to digital preservation

Abstract

In the recent years, the number of endangered animals, both referred to livestock and wild species, has grown enormously. The “livestock” term refers to animals domesticated for producing commodities for man such as food, fiber and draught. Livestock biodiversity is integral to our culture, history, environment, and economy. Thousands of livestock breeds have evolved over time to suit particular environments and farming systems. Conservation and analyses of these genetic resources rely on demographic characterization and correct breeding schemes. In addition, molecular genetic studies allow to identify and monitor the genetic diversity within and across breeds and to reconstruct their evolution history. The conservation of livestock variability is also a crucial element in order to preserve and valorise specific nutritional and nutraceutical properties of animal products. Efficient ex situ and in situ conservation strategies, as well as the creation of bio-banks and specific biotechnological and bioinformatics tools for genetic analyses and digital preservation, are obligatory requirements in order to implement an appropriate action for the conservation of animal biodiversity. The main issues concerning different species are summarised, with particular reference to the livestock biodiversity still existing. Some examples of ex situ conservation strategies, which mainly refer to cryoconservation of semen, ova, embryos or tissues, developed in Italy, are presented, and the different actions in defense of Animal Genetic Resources (AnGR) developed within the European Community are illustrated. Interestingly, the same strategies for biological and digital analyses and preservation of livestock biodiversity can be exported to wild endangered animals in order to plan a correct conservation and repopulation of the species. Furthermore, the European Union has set up the guidelines to safeguard the biodiversity and to combat the extinction of animal species, and has made the protection of biodiversity and ecosystems one of the main objectives of the Sixth Environment Action Programme.

Share and Cite:

Pizzi, F. , Caroli, A. , Landini, M. , Galluccio, N. , Mezzelani, A. and Milanesi, L. (2013) Conservation of endangered animals: From biotechnologies to digital preservation. Natural Science, 5, 903-913. doi: 10.4236/ns.2013.58109.

Conflicts of Interest

The authors declare no conflicts of interest.

References

[1] Zeder, M.A. (2008) Domestication and early agriculture in the Mediterranean Basin: Origins, diffusion, and impact. Proceedings of the National Academy of Sciences USA, 105, 11597-11604. doi:10.1073/
pnas.0801317105
[2] Hall, J.C. (2004) Livestock biodiversity: Genetic resour ces for the farming of the future. Wiley-Blackwell.
[3] Rischkowsky, B. and Pilling, D (2007) The state of the world’s Animal Genetic Resources for food and agriculture. FAO, Rome.
[4] Rognoni, G., Pagnacco, G. and Boselli, E. (1983) Atlante etnografico delle popolazioni bovine allevate in Italia. Consiglio Nazionale delle Ricerche.
[5] Maijala, K., Cherekaev, A.V., Devillard, J.M., Reklewski, Z., Rognoni, G., Simon, D.L. and Steane, D. (1984) Con servation of Animal Genetic Resources in Europe. Final report of the European Association of an E.A.A.P. work ing party. Livestock Production Science, 11, 3-22. doi:10.1016/0301-6226(84)90003-4
[6] FAO (2000) World watch list for domestic animal diver sity. 3rd Edition, B. Scheaf, Rome.
[7] Martyniuk, E., Pilling, D. and Scherf, B. (2010) Indica tors: Do we have effective tools to measure trends in ge netic diversity of domesticated animals? Animal Genetic Resources, 47, 31-43. doi:10.1017/S2078633610001013
[8] Martini, M., Salari, F., Altomonte, I., Rignanese, D., Chessa, S., Gigliotti, C. and Caroli, A.M. (2010) The Gar fagnina goat: A zootechnical overview of a dairy local population. Journal of Dairy Science, 93, 4659-4667. doi:10.3168/jds.2010-3207
[9] Rizzi, R., Tullo, E., Cito, A.M., Caroli, A. and Pieragos tini, E. (2011) Monitoring of genetic diversity in the en dangered Martina Franca donkey population. Journal of Animal Science, 89, 1304-1311. doi:10.2527/jas.2010-3379
[10] FAO (2012) Phenotypic characterization of animal ge netic resources. FAO Animal Production and Health Guidelines No. 11, Rome.
[11] Caroli, A.M., Chessa, S. and Erhardt G.J. (2009) Invited review: Milk protein genetic variation in cattle: Impact on animal breeding and human nutrition. Journal of Dairy Science, 92, 5335-5352. doi:10.3168/jds.2009-2461
[12] Groeneveld, L.F., Lenstra, J.A., Eding, H., Toro, M.A., Scherf, B., Pilling, D., Negrini, R., Finlay, E.K., Jianlin, H., Groeneveld, E. and Weigend, S. (2010) GLOBALDIV Consortium. Genetic diversity in farm animals—A review. Animal Genetics, 41, 6-31. doi:10.1111/j.1365-2052.2010.02038.x
[13] Pieragostini, E., Alloggio, I., Petazzi, F. (2010) Insights into hemoglobin polymorphism and related functional ef fects on hematological pattern in Mediterranean cattle, goat and sheep. Diversity, 2, 679-700. doi:10.3390/d2040679
[14] Chessa, S., Chiatti, F., Ceriotti, G., Caroli, A., Consolandi, C., Pagnacco, G. and Castiglioni, B. (2007) Development of a SNP genotyping microarray platform for the identifi cation of bovine milk protein genetic polymorphisms. Journal of Dairy Science, 90, 451-464. doi:10.3168/jds.S0022-0302(07)72647-4
[15] Pariset, L., Caroli, A., Chessa, S., Fontanesi, L., Russo, V., Bagnato, A., Schiavini F., Samoré A.B., Feligini M., Bonizzi I., Vicario D., Rossoni A., Sangalli S., Marino R., Perini D., Nicolazzi E.L., Macciotta N.P.P. and Ajmone Marsan P. (2009) Assessment of 29 candidate genes for milk traits in Italian dairy cattle. Italian Journal of Ani mal Science, 8, 226.
[16] Pariset, L., Cappuccio, I., Ajmone Marsan, P., Dunner, S., Luikart, G., England, P.R., Obexer-Ruff, G., Peter, C., Marletta, D., Pilla, F. and Valentini, A. (2006) ECONO GENE Consortium. Assessment of population structure by single nucleotide polymorphisms (SNPs) in goat breeds. Journal of Chromatography B, 833, 117-120. doi:10.1016/j.jchromb.2006.01.011
[17] Pariset, L., Cuteri, A., Ligda, C., Ajmone-Marsan, P. and Valentini, A. (2009) ECONOGENE Consortium. Geogra phical patterning of sixteen goat breeds from Italy, Alba nia and Greece assessed by Single Nucleotide Polymor phisms. BMC Ecology, 9, 20. doi:10.1186/1472-6785-9-20
[18] Damiani, G., Florio, S., Panelli, S., Capelli, E. and Cuccia, M. (2008) The Bov-A2 retroelement played a crucial role in the evolution of ruminants. Biology Forum, 101, 375-404.
[19] Pellecchia, M., Negrini, R., Colli, L., Patrini, M., Mila nesi, E., Achilli, A., Bertorelle, G., Cavalli-Sforza, L.L., Piazza, A., Torroni, A. and Ajmone-Marsan, P. (2007) The mystery of Etruscan origins: Novel clues from Bos taurus mitochondrial DNA. Proceedings of the Royal Society B, 274, 1175-1179.
[20] Beja-Pereira, A., Caramelli, D., Lalueza-Fox, C., Verne si, C., Ferrand, N., Casoli, A., Goyache, F., Royo, L.J., Con ti, S., Lari, M., Martini, A., Ouragh, L., Magid, A., Atash, A., Zsolnai, A., Boscato, P., Triantaphylidis, C., Ploumi, K., Sineo, L., Mallegni, F., Taberlet, P., Erhardt, G., Sam pietro, L., Bertranpetit, J., Barbujani, G., Luikart, G and Bertorelle, G. (2006) The origin of European cattle: evidence from modern and ancient DNA. Proceedings of the National Academy of Sciences USA, 103, 8113-8118.
[21] Ballabio, C., Chessa, S., Rignanese, D., Gigliotti, C., Pag nacco, G., Terracciano, L., Fiocchi, A., Restani, P. and Caroli, A.M. (2011) Goat milk allergenicity as a function of alphas1-casein genetic polymorphism. Journal of Dairy Science, 94, 998-1004. doi:10.3168/jds.2010-3545
[22] Lorenzini, E., Chessa, S., Chiatti, F., Caroli, A. and Pag nacco, G. (2007) Peptidi bioattivi di latte e derivati. Scien za e Tecnica Lattiero-Casearia, 58, 113-156.
[23] Weimann, C., Meisel, H. and Erhardt G. (2009) Short communication: Bovine κ-casein variants result in dif ferent angiotensin I converting enzyme (ACE) inhibitory peptides. Journal of Dairy Science, 92, 1885-1888. doi:10.3168/jds.2008-1671
[24] Tulipano, G., Bulgari, O., Chessa, S., Nardone, A., Cocchi, D. and Caroli, A. (2010) Direct effects of casein phos phopeptides on growth and differentiation of in vitro cul tured osteoblastic cells (MC3T3-E1). Regulatory Peptides, 160, 168-174. doi:10.1016/j.regpep.2009.11.018
[25] Tulipano, G., Cocchi, D. and Caroli, A.M. (2012) Com parison of goat and sheep β-lactoglobulin to bovine β lactoglobulin as potential source of dipeptidyl peptidase IV (DPP-4) inhibitors. International Dairy Journal, 24, 97-101. doi:10.1016/j.idairyj.2011.09.004
[26] Beja-Pereira, A., Luikart, G., England, P.R., Bradley, D.G., Jann, O.C., Bertorelle, G., Chamberlain, A.T., Nunes, T.P., Metodiev, S., Ferrand, N. and Erhardt, G. (2003) Gene culture coevolution between cattle milk protein genes and human lactase genes. Nature Genetics, 35, 311-313. doi:10.1038/ng1263
[27] CBD (1992) Convention on biological diversity. http://www.cbd.int/doc/legal/cbd-en.pdf
[28] Gandini, G., Avon, L., Bohte-Wilhelmus, D., Bay, E., Co linet, F.G., Choroszy, Z., Díaz, C., Duclos, D., Fernández, J., Gengler, N., Hoving-Bolink, R., Keamey, F., Lilja, T., Maki-Tanila, A., Martín-Collado, D., Maurice-van Eijnd hoven, M., Musella, M., Pizzi, F., Soini, K., Toro, M., Turri, F., Viinalas, H., the EURECA Consortium and Hiemstra, S.J. (2010) Motives and values in farming local cattle breeds in Europe: A survey on 15 breeds. Animal Genetic Resources, 47, 45-58. doi:10.1017/S2078633610000901
[29] Gandini. G,, Maltecca, C., Pizzi, F., Bagnato, A. and Rizzi, R. (2007) Comparing local and commercial breeds on functional traits and profitability: The case of Reggiana Dairy Cattle. Journal of Dairy Science, 90, 2004-2011. doi:10.3168/jds.2006-204
[30] Gandini, G. and Villa, E. (2003) Analysis of the cultural value of local livestock breeds: A methodology. Journal of Animal Breeding and Genetics, 120, 1-11. doi:10.1046/j.1439-0388.2003.00365.x
[31] Gandini, G. and Oldenbroek, K. (2007) Strategies for moving from conservation to utilization. In: Oldenbroek, K., Ed., Utilisation and Conservation of Farm Animal Genetic Resources. Wageningen Academic Publishers, Wageningen, 29-54.
[32] ERFP (2003) Guidelines for the constitution of national cryopreservation programmes for farm animals. Publica tion No. 1 of the European Regional Focal Point on Ani mal Genetic Resources Hiemstra, SJ1.
[33] Fernández, J., Roughsedge, T., Woolliams, J.A. and Villa nueva, B. (2006) Optimization of the sampling strategy for establishing a gene bank: Storing PrP alleles follow ing a Scrapie eradication plan as a case study. Animal Science, 82, 813-21. doi:10.1017/ASC2006101
[34] Meuwissen, T.H.E. (2007) Operation of conservation schemes. In: Oldenbroek, K, Ed., Utilisation and Con servation of Farm Animal Genetic Resources, Wagenin gen Academic Publishers, Wageningen, 167-193.
[35] Boettcher, P.J., Stella, A., Pizzi, F. and Gandini, G. (2005) The combined use of embryos and semen for cryogenic conservation of farm mammal genetic resources. Genetic Selection Evoution, 37, 657-675. doi:10.1186/1297-9686-37-7-657
[36] Gandini, G., Pizzi, F., Stella, A. and Boettcher, P.J. (2007) The costs of breed reconstruction from cryopreserved material in mammalian livestock species. Genetic Selec tion Evoution, 39, 465-479. doi:10.1186/1297-9686-39-4-465
[37] Santiago-Moreno, J., Toledano-Díaz, A., Pulido-Pastor, A., Gómez-Brunet, A. and López-Sebastián, A. (2006) Birth of live Spanish ibex (Capra pyrenaica hispanica) derived from artificial insemination with epididymal sper matozoa retrieved after death. Theriogenology, 66, 283-291. doi:10.1016/j.theriogenology.2005.11.012
[38] Ehling, C., Rath, D., Struckmann, C., Frenzel, A., Schin dler, L. and Niemann, H. (2006) Utilization of frozen thawed epididymal ram semen to preserve genetic diver sity in Scrapie susceptible sheep breeds. Theriogenology, 66, 2160-2164. doi:10.1016/j.theriogenology.2006.07.003
[39] Bagirov, V., Nasibov, S.H. and Klenovitskii, P. (2009) Animal gene pool preservation and conservation. Russian Agriculture Sciences, 35, 112-115. doi:10.3103/S1068367409020141
[40] León-Quinto, T., Simón, M.A., Cadenas, R., Jones, J., Martínez-Hernández, F., Moreno, J.M., Vargas, A., Mar tínez, F. and Soria, B. (2009) Developing biological re source banks as a supporting tool for wildlife reproduc tion and conservation. Animal Reproduction Science, 112, 347-361. doi:10.1016/j.anireprosci.2008.05.070
[41] Kikuchi, K., Nagai, J., Kashiwazaki, N., Ikeda, H., No guchi, J., Shimada, A., Soloy, E. and Kaneko, H. (1998) Cryopreservation and ensuing in vitro fertilization ability of boar spermatozoa from epididymides stored at 4°C. Theriogenology, 50, 615-623. doi:10.1016/S0093-691X(98)00166-6
[42] Martins, C.F., Driessen, K., Melo Costa, P., Carvalho Neto, J.O., de Sousa, R.V., Rumpf, R. and Dode, M.N. (2009) Recovery, cryopreservation and fertilization po tential of bovine spermatozoa obtained from epididy mides stored at 5°C by different periods of time. Animal Reproduction Science, 116, 50-57. doi:10.1016/j.anireprosci.2008.12.018
[43] Turri, F., Madeddu, M., Gliozzi, T.M., Gandini, G. and Pizzi, F. (2012) Influence of recovery methods and ex tenders on bull epididymal spermatozoa quality. Repro duction in Domestic Animals, 47, 712-717. doi:10.1111/j.1439-0531.2011.01948.x
[44] Blash, S., Melican, D. and Gavin, W. (2000) Cryopre servation of epididymal sperm obtained at necroscopsy from goats. Theriogenology, 54, 899-905. doi:10.1016/S0093-691X(00)00400-3
[45] Santiago-Moreno, J., Toledano-Díaz, A., Pulido-Pastor, A., Gómez-Brunetm A. and López-Sebastián, A. (2006) Birth of live Spanish ibex (Capra pyrenaica hispanica) derived from artificial insemination with epididymal sper matozoa retrieved after death. Theriogenology, 66, 283-291. doi:10.1016/j.theriogenology.2005.11.012
[46] Santiago-Moreno, J., Astorga, R.J., Luque, I., Coloma, A.M., Toledano-Diaz, A., Pulido-Pastor, A., Gomez-Guil lamon, F., Salas-Vega, R. and Lopez-Sebastian, A. (2009) Influence of recovery method and microbial contamina tion on the response to freezing-thawing in ibex (Capra pyrenaica) epididymal spermatozoa. Cryobiology, 59, 357-362. doi:10.1016/j.cryobiol.2009.09.012
[47] Martinez-Pastor, F., Garcia-Macias, V., Alvarez, M., Cha morro, C., Herraez, P., de Paz, P. and Anel, L. (2006) Comparison of two methods for obtaining spermatozoa from the cauda epididymis of Iberian red deer. Therio genology, 65, 471-485. doi:10.1016/j.theriogenology.2005.05.045
[48] Kaabi, M, Paz, P, Alvarez, M., Anel, E., Boixo, J.C., Rouissi, H., Herraez, P. and Anel, L. (2003) Effect of epididymis handling conditions on the quality of ram spermatozoa recovered post mortem. Theriogenology, 60, 1249-1259. doi:10.1016/S0093-691X(03)00139-0
[49] James, A.N., Green, H., Hoffman, S., Landry, A.M., Pac camonti, D. and Godke R.A. (2002) Preservation of equ ine sperm stored in the epididymis at 4°C for 24, 48, 72 and 96 hours. Theriogenology, 58, 401-404. doi:10.1016/S0093-691X(02)00883-X
[50] Martins, C.F., Driessen, K., Melo Costa, P., Carvalho Neto, J.O., de Sousa, R.V., Rumpf, R. and Dode, M.N. (2009) Recovery, cryopreservation and fertilization po tential of bovine spermatozoa obtained from epidi dymides stored at 5°C by different periods of time. Ani mal Reproduction Science, 116, 50-57. doi:10.1016/j.anireprosci.2008.12.018
[51] Fernández-Santos, M.R., Soler, A.J., Ramón, M., Ros Santaella, J.L. and Maroto-Morales, A. (2011) Effect of post mortem time on post-thaw characteristics of Spanish ibex (Capra pyrenaica) spermatozoa. Animal Reproduc tion Science, 129, 56-66. doi:10.1016/j.anireprosci.2011.09.011
[52] FAO (2012) Cryoconservation of animal genetic re sources. FAO Animal Production and Health Guidelines, Vol. 12, Rome.
[53] Pizzi, F., Duclos, D., Woelders, H. and Maki Tanila, A. (2010) Role and state of cryopreservation in local cattle breeds In: Heimstra S.J., De Haas, Y., Maki Tanila, A. and Gandini, G., Eds., Local Cattle Breeds in Europe, 78-96.
[54] Gandini, G. and Pizzi, F. (2011) Crioconservazione delle risorse genetiche animali in Italia. In: Fondazione Inizi ative Zooprofilattiche e Zootecniche, La salvaguardia della biodiversità animale—Iniziative generali ed azioni intraprese in Italia a tutela delle razze minacciate, Brescia, 67-74.
[55] Duchev, Z., Cong, T.V.C. and Groeneveld, E. (2010) CryoWEB: Web software for the documentation of the cryopreserved material in animal gene banks. Bioinfor mation, 5, 219-220. doi:10.6026/9732063000
5219
[56] Scudder, G.G.E. (1999) Species at risk, conservation strategies and ecological integrity. Proceedings of a Con ference on the Biology and Management of Species and Habitats at Risk, 1, 15-19.
[57] Rhymer, J.M. and Simberloff, D. (1996) Extinction by hybridization and introgression. Annual Review of Ecol ogy and Systematics, 27, 83-109. doi:10.1146/annurev.ecolsys.27.1.83
[58] Soulé, M.E. (1986) What is conservation biology? Bio Science, 35, 727-734.
[59] Trabucchi, M., Ntshotsho, P., O’Farrell, P. and Comín, F.A. (2012) Ecosystem service trends in basin-scale res toration initiatives: A review. Journal of Environmental Management, 111, 18-23. doi:10.1016/j.jenvman.2012.06.040
[60] Commission of the European Communities (2008) Pro viding restoration guidelines for natura 2000 habitats and species. http://biodiversitychm.eea.europa.eu/events/providing-restoration-guidelines-natura-2000/network/other/Global/society-ecological-restoration-international/UK-SER_2008_rev.doc
[61] Endangered species. http://eur-lex.europa.eu/en/dossier/dossier_34.htm#1
[62] Luck, G.W., Daily, G.C. and Ehrlich, P.R. (2003) Popula tion diversity and ecosystem services. Trends in Ecology & Evolution, 18, 331-336. doi:10.1016/S0169-5347(03)00100-9
[63] Collins, P.W., Latta, B.C. and Roemer, G.W. (2009) Does the order of invasive species removal matter? The case of the eagle and the pig. PLoS One, 4, e7005. doi:10.1371/journal.pone.0007005
[64] Snyder, N.F.R., Derrickson, S.R., Beissinger, S.R., Wiley, J.W., Smith, T.B., Toone, W.D. and Miller, B. (1996) Limitation of captive breeding in endangered species re covery. Conservation Biology, 10, 338-348. doi:10.1046/j.1523-1739.1996.10020338.x
[65] Macleod, A.K., Liewald, D.C., McGilchrist, M.M., Mor ris, A.D., Kerr, S.M. and Porteous, D.J. (2009) Some principles and practices of genetic biobanking studies. The European Respiratory Journal, 33, 419-425. doi:10.1183/09031936.00043508
[66] Official Journal of the European Union (2012) L 194/39 Commission Recommendation of 17 July 2012 on access and preservation of scientific information (2012/417/UE). http://eurlex.europa.eu/LexUriServ/
LexUriServ.do?uri=OJ:L:2012:194:0039:0043:EN:PDF
[67] Norma ISO 14721:2003 (2002) Reference model for an Open Archival Information System (OAIS). Blue Book, CCSDS 650.0-B-1.
[68] ANAPRI (2007) L’attività del prof. Giuseppe Rognoni nella Pezzata Rossa Italiana. Pezzata Rossa, 3, 5.

Copyright © 2024 by authors and Scientific Research Publishing Inc.

Creative Commons License

This work and the related PDF file are licensed under a Creative Commons Attribution 4.0 International License.