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On the Metaheuristics Approach to the Problem of Genetic Sequence Comparison and Its Parallel Implementation

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DOI: 10.4236/am.2013.410A1006    2,515 Downloads   4,107 Views   Citations

ABSTRACT

We describe parallel implementation of the metaheuristic approach to the problem of comparing strings representing DNA sequence. By this approach, one can define a whole new class of metrics on a set of strings; some of this metrics can lead to interesting results when used for string comparison. We propose several heuristics; compare results achieved when using those heuristics and compare parallel and sequential implementation of proposed approach.

Conflicts of Interest

The authors declare no conflicts of interest.

Cite this paper

S. Makarkin, B. Melnikov and A. Panin, "On the Metaheuristics Approach to the Problem of Genetic Sequence Comparison and Its Parallel Implementation," Applied Mathematics, Vol. 4 No. 10A, 2013, pp. 35-39. doi: 10.4236/am.2013.410A1006.

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