Article citationsMore>>
Pokholok, D.K., Harbison, C.T., Levine, S., Cole, M., Hannett, N.M., Lee, T.I., Bell, G.W., Walker, K., Rolfe, P.A., Herbolsheimer, E., Zeitlinger, J., Lewitter, F., Gifford, D.K. and Young, R.A. (2005) Genome-Wide Map of Nucleosome Acetylation and Methylation in Yeast. Cell, 122, 517-527. https://doi.org/10.1016/j.cell.2005.06.026
has been cited by the following article:
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TITLE:
Combined Use of k-Mer Numerical Features and Position-Specific Categorical Features in Fixed-Length DNA Sequence Classification
AUTHORS:
Dau Phan, Ngoc Giang Nguyen, Favorisen Rosyking Lumbanraja, Mohammad Reza Faisal, Bahriddin Abapihi, Bedy Purnama, Mera Kartika Delimayanti, Mamoru Kubo, Kenji Satou
KEYWORDS:
Sequence Classification, Numerical and Categorical Features, Feature Selection
JOURNAL NAME:
Journal of Biomedical Science and Engineering,
Vol.10 No.8,
August
30,
2017
ABSTRACT: To classify DNA sequences, k-mer frequency is widely used since it can convert variable-length sequences into fixed-length and numerical feature vectors. However, in case of fixed-length DNA sequence classification, subsequences starting at a specific position of the given sequence can also be used as categorical features. Through the performance evaluation on six datasets of fixed-length DNA sequences, our algorithm based on the above idea achieved comparable or better performance than other state-of-the art algorithms.
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