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J. D. Thompson, D. G. Higgins and T. J. Gibson, “CLUSTAL_W: Improving the Sensitivity of Progressive Multiple Sequence Alignment through Sequence Weighting, Position-Specific Gap Penalties and Weight Matrix Choice,” Nucleic Acids Research, Vol. 22, 1994, pp. 4673-4680.
http://dx.doi.org/10.1093/nar/22.22.4673

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