Molecular Phylogeny of the Philippine Endemic Genus Antherostele Bremek. (Rubiaceae) Inferred from ITS Data (nrDNA) and Its Conservation Status

Abstract

Antherostele Bremek. is an understudied genus of Rubiaceae endemic to the Philippines formerly comprising four species of shrubs or small trees distributed in Luzon and Visayas. In this first molecular study of the genus, the ITS (nrDNA) was utilized to determine the monophyly of Antherostele, reconstruct its phylogeny, and resolve its placement in Rubiaceae. Furthermore, an update on the assessment of its conservation status of the included species in the genus was done. Antherostele is monophyletic and is nested within the tribe Urophylleae of subfamily Rubioideae which confirms its segregation from Urophyllum and its placement within Urophylleae as proposed by earlier authors based on morphology. However, the relationships of Urophylleae members remain unresolved. Antherostele is united by reflexed corolla, hairs on upper side of the corolla lobes and syngenesious stamens. The montane A. luzoniensis with small leaves is found to be sister to the rest of Antherostele species. Antherostele is hypothesized to originate from montane regions and diversified by forming larger leaves following dispersal to the shaded forest understory. From the five species of Antherostele currently recognized in the study, two are endangered (A. banahaensis, A. grandistipula) and three are critically endangered including a new species (A. callophylla, A. luzoniensis, A. sp. nov.) following the criteria of IUCN.

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J. Obico and G. Alejandro, "Molecular Phylogeny of the Philippine Endemic Genus Antherostele Bremek. (Rubiaceae) Inferred from ITS Data (nrDNA) and Its Conservation Status," American Journal of Plant Sciences, Vol. 3 No. 10, 2012, pp. 1399-1407. doi: 10.4236/ajps.2012.310169.

Conflicts of Interest

The authors declare no conflicts of interest.

References

[1] E. Robbrecht, “Tropical Woody Rubiaceae,” Opera Botanica Belgica, Vol. 1, 1988, pp. 1-271
[2] G. D. Alejandro and S. Liede, “The Philippine Rubiaceae Genera: Updated Synopsis in INTKEY Databases of the DELTA System,” Blumea, Vol. 48, 2003, pp. 261-277.
[3] G. D. Alejandro, “Review: The Current Status of the Philippine Rubiaceae,” Philippine Journal of Systematic Biology, Vol. 1, No. 1, 2007, pp. 47-60.
[4] G. D. Alejandro, U. Meve, M. Uy, A. Mouly, M. Thiv, and S. Liede-Schumann, “Molecular Support of the Classification of Greeniopsis Merr. in Aleisanthieae (Rubiaceae) with a Revision of the Genus,” Taxon, Vol. 59, No. 5, 2010, pp. 1547-1564.
[5] G. D. Alejandro, U. Meve, A. Mouly, M. Thiv and S. Liede-Schumann, “Molecular Phylogeny and Taxonomic Revision of the Philippine Endemic Villaria Rolfe (Rubiaceae),” Plant Systematics & Evolution, Vol. 296, No. 1-2, 2011, pp. 1-20. doi:10.1007/s00606-011-0472-9
[6] C. E. B. Bremekamp, “Antherostele, Genus Novum Rubiacerum Urophyllo Affine,” Journal of Arnold Arboretum, Vol. 21, No. 1, 1940, pp. 25-31.
[7] E. Robbrecht, “Advances in Rubiaceae Macrosystematics,” Opera Botanica Belgica, Vol. 6, 1993, pp. 7-29.
[8] B. G. Baldwin, M. J. Sanderson, J. M. Porter, M. F. Wojchiechowski, C. S. Campbell and M. J. Donoghue, “The ITS Region of Nuclear Ribosomal DNA: A Valuable Source of Evidence on Angiosperm Phylogency,” Annals of the Missouri Botanical Garden, Vol. 82, No. 2, 1995, pp. 247-277. doi:10.2307/2399880
[9] D. E. Soltis, P. S. Soltis and J. J. Doyle, “Molecular Systematics of Plants II: DNA Sequencing,” Kluwer Academic Publishers, Boston, 1998.
[10] I. Alvarez and J. F. Wendel, “Ribosomal ITS Sequences and Plant Phylogenetic Inference,” Molecular Phylogenetics and Evolution, Vol. 29, No. 3, 2003, pp. 417-434. doi:10.1016/S1055-7903(03)00208-2
[11] K. Andreasen, B. G. Baldwin and B. Bremer, “Phylogenetic Utility of the Nuclear rDNA ITS Region in Submfamily Ixoroideae (Rubiaceae): Comparisons with cpDNA rbcL Sequence Data,” Plant Systematics & Evolution, Vol. 217, No. 1-2, 1998, pp. 119-135. doi:10.1007/BF00984925
[12] S. G. Razafimandimbision and B. Bremer, “Phylogeny and Classification of Naucleaes.L. (Rubiaceae) Inferred from Molecular (ITS, rbcL, and trnT-F) and Morphological Data,” American Journal of Botany, Vol. 89, No. 7, 2002, pp. 1027-1041. doi:10.3732/ajb.89.7.1027
[13] G. D. Alejandro, S. G. Razafimandimbison and S. LiedeSchumann, “Polyphyly of Mussaenda Inferred from ITS and trnt-T Data and Its Implication for Generic Limits in Mussaendeae (Rubiaceae),” American Journal of Botany, Vol. 92, No. 3, 2005, pp. 544-557. doi:10.3732/ajb.92.3.544
[14] F. Achille, T. J. Motley, P. P. Lowry and J. Jeremie, “Polyphyly in Guettarda L. (Rubiaceae, Guettardeae) Based on nrDNA ITS Sequence Data,” Annals of the Missouri Botanical Garden, Vol. 93, No. 1, 2006, pp. 103-121. doi:10.3417/0026-6493(2006)93[103:PIGLRG]2.0.CO;2
[15] J. H. E. Rova, P. G. Delprete and B. Bremer, “The Rondeletia Complex (Rubiaceae): An Attempt to Use ITS, rps1, and trnL-F Sequence Data to Delimit Guettardeae, Rondeletieae, and Sections within Rondeletia,” Annals of the Missouri Botanical Garden, Vol. 96, No. 1, pp. 182-193. doi:10.3417/2006179
[16] Department of Environment and Natural Resources, “Establishing the National List of Threatened Philippine Plants and Their Categories, and the List of Other Wildlife Species,” DENR Administrative Order No. 2007-01, 2007.
[17] International Union for Conservation of Nature, “2001 Categories and Criteria (version 3.1),” IUCN, Gland, Switzerland, 2001. http://www.redlist.org/info/categories_criteria2001.html
[18] M. W. Chase and H. H. Hills, “Silica Gel: An Ideal Material for Preservation of Leaf Samples for DNA Studies,” Taxon, Vol. 40, No. 2, 1991, pp. 215-220. doi:10.2307/1222975
[19] G. D. Alejandro, S. G. Razafimandimbison and S. L. Schumann, “Polyphyly of Mussaenda Inferred from ITS and trnt-T data and Its Implication for Generic Limits in Mussaendeae (Rubiaceae),” American Journal of Botany, Vol. 92, No. 3, 2005, pp. 544-557. doi:10.3732/ajb.92.3.544
[20] M. Popp, and B. Oxelman, “Inferring the History of the Polyploidy in Silene aegaea (Caryophyllaceae) Using Plastid and Homoeologous Nuclear DNA Sequences,” Molecular Phylogenetics and Evolution, Vol. 20, No. 2, 2001, pp. 474-481. doi:10.1006/mpev.2001.0977
[21] B. G. Baldwin, “Phylogenetic Utility of the Internal Transcribed Spacers of Nuclear Ribosomal DNA in Plants: An Example from the Compositae,” Molecular Phylogenetics and Evolution, Vol. 1, No. 1, 1992, pp. 3-16. doi:10.1016/1055-7903(92)90030-K
[22] E. Robbrecht and J. Manen, “The Major Evolutionary Lineages of the Coffee Family (Rubiaceae, Angiosperms). Combined Analysis (nDNA and cpDNA) to Infer the Position of Coptosapelta and Luculia, and Supertree Construction Based on rbcL, rps16, trnL-trnF and atpB-rbcL Data. A New Classification in Two Subfamilies, Cinchonoideae and Rubioideae,” Systematics and Geography Plants, Vol. 76, 2006, pp. 85-146.
[23] J. E. Smedmark, C. Rydin, S. G. Razafimandimbison, S. A. Khan, S. Liede-Schumann and B. Bremer, “A Phylogeny of Urophylleae (Rubiaceae) Based on rps16 Intron Data,” Taxon, Vol. 57, No. 1, 2008, pp. 24-32.
[24] B. Bremer, “Phylogenetic Studies within Rubiaceae and Relationships to Other Families Based on Molecular Data,” Opera Botanica Belgica, Vol. 7, 1996, pp. 33-50.
[25] B. G. Baldwin, M. J. Sanderson, J. M. Porter, M. F. Wojchiechowski, C. S. Campbell and M. J. Donoghue, “The ITS Region of Nuclear Ribosomal DNA: A Valuable Source of Evidence on Angiosperm Phylogeny,” Annals of the Missouri Botanical Garden, Vol. 82, 1995, pp. 247-277. doi:10.2307/2399880
[26] D. L. Swofford, “Phylogenetic Analysis Using Parsimony Analysis version 4.0b,” Sinauer Associates, Massachusetts, 2002.
[27] A. G. Kluge and J. S. Farris, “Quantitative Phyletics and the Evolution of Anurans,” Systematic Zoology, Vol. 18, No. 1, 1969, pp. 1-32. doi:10.2307/2412407
[28] J. S. Farris, “The Retention Index and the Rescaled Consistency Index,” Cladistics, Vol. 5, No. 4, 1989, pp. 417-419. doi:10.1111/j.1096-0031.1989.tb00573.x
[29] J. Felsenstein, “Confidence Limits on Phylogenies: An Approach Using Bootstrap,” Evolution, Vol. 39, No. 4, 1985, pp. 783-791. doi:10.2307/2408678
[30] R. D. M. Page, “TREEVIEW: An Application to Display Phylogenetic Trees on Personal Computers,” Computer Applications in the Biosciences, Vol. 12, No. 4, 1996, pp. 357-358.
[31] W. P. Maddison and D. R. Maddison, “Mesquite: A Modular System for Evolutionary Analysis, version 2.74,” 2001. http://mesquiteproject.org
[32] S. Jansen, S. Dessein, F. Piesschaert, E. Robbrecht and E. Smets, “Aluminum Accumulation in Leaves of Rubiaceae: Systematic and Phylogenetic Implications,” Annals of Botany, Vol. 85, No. 1, 2000, pp. 91-101. doi:10.1006/anbo.1999.1000

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