[1]
|
Lassmann, T. and Sonnhammer, E.L. (2005) Kalign—An Accurate and Fast Multiple Sequence Alignment Algorithm. BMC Bioinformatics, 6, 298. http://dx.doi.org/10.1186/1471-2105-6-298
|
[2]
|
Allen, A. (1994) Computer Performance Analysis with Mathematica. Academic Press, New York.
|
[3]
|
DeSalle, R. and Giddings, L.V. (1986) Discordance of Nuclear and Mitochondrial DNA Phylogenies in Hawaiian Drosophila. Proceedings of the National Academy of Sciences, 83, 6902-6906. http://dx.doi.org/10.1073/pnas.83.18.6902
|
[4]
|
Rubinoff, D. and Holland, B.S. (2005) Between Two Extremes: Mitochondrial DNA Is Neither the Panacea Nor the Nemesis of Phylogenetic and Taxonomic Inference. Systematic Biology, 54, 952-961. http://dx.doi.org/10.1080/10635150500234674
|
[5]
|
Hurst, G.D. and Jiggins, F.M. (2005) Problems with Mitochondrial DNA as a Marker in Population, Phylogeographic and Phylogenetic Studies: The Effects of Inherited Symbionts. Proceedings of the Royal Society B: Biological Sciences, 272, 1525-1534. http://dx.doi.org/10.1098/rspb.2005.3056
|
[6]
|
Coyne, J. (2012) A New Study of Polar Bears Underlines the Dangers of Reconstructing Evolution Using Mitochondrial DNA. Why Evolution Is True. http://whyevolutionistrue.wordpress.com
|
[7]
|
Miller, W., Schuster, S.C., Welch, A.J., Ratan, A., Bedoya-Reina, O.C., Zhao, F. and Lindqvist, C. (2012) Polar and Brown Bear Genomes Reveal Ancient Admixture and Demographic Footprints of Past Climate Change. Proceedings of the National Academy of Sciences, 109, E2382-E2390. http://dx.doi.org/10.1073/pnas.1210506109
|
[8]
|
Larsen, P.A., Marchán-Rivadeneira, M.R. and Baker, R.J. (2010) Natural Hybridization Generates Mammalian Lineage with Species Characteristics. Proceedings of the National Academy of Sciences, 107, 11447-11452. http://dx.doi.org/10.1073/pnas.1000133107
|
[9]
|
Genner, M.J. and Turner, G.F. (2012) Ancient Hybridization and Phenotypic Novelty within Lake Malawi’s Cichlid Fish Radiation. Molecular Biology and Evolution, 29, 195-206. http://dx.doi.org/10.1093/molbev/msr183
|
[10]
|
Nishihara, H., Satta, Y., Nikaido, M., Thewissen, J.G.M., Stanhope, M.J. and Okada, N. (2005) A Retroposon Analysis of Afrotherian Phylogeny. Molecular Biology and Evolution, 22, 1823-1833. http://dx.doi.org/10.1093/molbev/msi179
|
[11]
|
Orlando, L., Hänni, C. and Douady, C.J. (2007) Mammoth and Elephant Phylogenetic Relationships: Mammut Americanum, the Missing Outgroup. Evolutionary Bioinformatics Online, 3, 45.
|
[12]
|
Rohland, N., Reich, D., Mallick, S., Meyer, M., Green, R.E., Georgiadis and Hofreiter, M. (2010) Genomic DNA Sequences from Mastodon and Woolly Mammoth Reveal Deep Speciation of Forest and Savanna Elephants. PLoS Biology, 8, Article ID: e1000564. http://dx.doi.org/10.1371/journal.pbio.1000564
|
[13]
|
Ripple, J. (1999) Manatees and Dugongs of the World. Voyageur Press, London.
|
[14]
|
de Jong, W.W., Zweers, A. and Goodman, M. (1981) Relationship of Aardvark to Elephants, Hyraxes and Sea Cows from α-Crystallin Sequences. Nature, 292, 538-540.
|
[15]
|
Honeycutt, R.L. (2008) Small Changes, Big Results: Evolution of Morphological Discontinuity in Mammals. Journal of biology, 7, 9. http://dx.doi.org/10.1186/jbiol71
|
[16]
|
Nishihara, H., Satta, Y., Nikaido, M., Thewissen, J.G.M., Stanhope, M.J. and Okada, N. (2005) A Retroposon Analysis of Afrotherian Phylogeny. Molecular biology and evolution, 22, 1823-1833. http://dx.doi.org/10.1093/molbev/msi179
|
[17]
|
University of Calgary (2009) Is The Hippopotamus The Closest Living Relative to the Whale? Science Daily. http://www.sciencedaily.com-/releases/2009/03/090318153803.htm
|
[18]
|
Krause, J., Unger, T., Noçon, A., Malaspinas, A.S., Kolokotronis, S.O., Stiller, M. and Hofreiter, M. (2008) Mitochondrial Genomes Reveal an Explosive Radiation of Extinct and Extant Bears near the Miocene-Pliocene Boundary. BMC Evolutionary Biology, 8, 220. http://dx.doi.org/10.1186/1471-2148-8-220
|