[1]
|
Chambers, G.K. and Macavoy, E.S. (2000) Microsatellites: Consensus and controversy. Comparative Biochemistry and Physiology, 126, 455-476.
doi:10.1016/S0305-0491(00)00233-9
|
[2]
|
Hancock, J.M. (1995) The contribution of slippage-like processes to genome evolution. Journal of Molecular Evolution, 41, 1038-1047. doi:10.1007/BF00173185
|
[3]
|
Gerber, H., Seipel, K., Georgiev, O., H?fferer, M., Hug, M., Rusconi, S. and Schaffner, W. (1994) Transcriptional activation modulated by homopolymeric glutamine and proline stretches. Science, 263, 808-811.
doi:10.1126/science.8303297
|
[4]
|
Kashi, Y., King, D. and Soller, M. (1997) Simple sequence repeats as a source of quantitative genetic variation. Trends in Genetics, 13, 74-78.
doi:10.1016/S0168-9525(97)01008-1
|
[5]
|
Schl?tterer, C. and Tautz, D. (1992) Slippage synthesis of simple sequence DNA. Nucleic Acids Research, 20, 211-215. doi:10.1093/nar/20.2.211
|
[6]
|
Buschiazzo, E. and Gemmell, N.J. (2006) The rise, fall and renaissance of microsatellites in eukaryotic genomes. Bioessays, 28, 1040-1050. doi:10.1002/bies.20470
|
[7]
|
Selkoe, K.A. and Toonen, R.J. (2006) Microsatellites for ecologists: A practical guide to using and evaluating microsatellite markers. Ecology Letters, 9, 615-629.
doi:10.1111/j.1461-0248.2006.00889.x
|
[8]
|
Mittal, N. and Dubey, A. (2009) Microsatellite markers— A new practice of DNA based markers in molecular genetics. Pharmacognosy Reviews, 3, 235-246.
|
[9]
|
Jones, A.G., Small, C.M., Paczolt, K.A. and Ratterman, N.L. (2010) A practical guide to methods of parentage analysis. Molecular Ecology Resources, 10, 6-30.
doi:10.1111/j.1755-0998.2009.02778.x
|
[10]
|
Guichoux, E., Lagache, L., Wagner, S., et al. (2011) Current trends in microsatellite genotyping. Molecular Ecology Resources, 11, 591-611.
doi:10.1111/j.1755-0998.2011.03014.x
|
[11]
|
Jarne, P. and Lagoda, P. (1996) Microsatellites, from molecules to populations and back. Trends in Ecology and Evolution, 11, 424-429.
doi:10.1016/0169-5347(96)10049-5
|
[12]
|
Zane, L., Bargelloni, L. and Patarnello, T. (2011) Strategies for microsatellite isolation: A review. Molecular Ecology, 11, 1-16.
doi:10.1046/j.0962-1083.2001.01418.x
|
[13]
|
Rassmann, K., Schl?tterer, C. and Tautz, D. (1991) Isolation of simple-sequence loci for use in polymerase chain reaction-based DNA fingerprinting. Electrophoresis, 12, 113-118. doi:10.1002/elps.1150120205
|
[14]
|
Kijas, J.M.H., Fowler, J.C.S., Garbett, C.A. and Thomas, M.R. (1194) Enrichment of microsatellites from the Citrus genome using biotinylated oligonucleotide sequences bound to streptavidin-coated magnetic particles. Biotechniques, 16, 656-662.
|
[15]
|
Kandpal, R.P., Kandpal, G. and Weissman, S.M. (1994) Construction of libraries enriched for sequence repeats and jumping clones, and hybridization selection for regions specific markers. Proceedings of National Academy of Science USA, 91, 88-92. doi:10.1073/pnas.91.1.88
|
[16]
|
Fischer, D. and Bachmann, K. (1998) Microsatellite enrichment in organisms with large genomes (Allium cepa L.). Biotechniques, 24, 796-802.
|
[17]
|
Pandey, M., Gailing, O., Fischer, D., Hattemer, H.H. and Finkeldey, R. (2004) Characterization of microsatellite markers in sycamore (Acer pseudoplatanus L.). Molecular Ecology Notes, 4, 253-255.
doi:10.1111/j.1471-8286.2004.00633.x
|
[18]
|
Hudson, M.E. (2008) Sequencing breakthroughs for genomic ecology and evolutionary biology. Molecular Ecology Notes, 8, 3-17.
|
[19]
|
Morozova, O. and Marra, M.A. (2008) Applications of next-generation sequencing technologies in functional genomics. Genomics, 92, 255-264.
doi:10.1016/j.ygeno.2008.07.001
|
[20]
|
Buehler, D., Graf, R., Holderegger, R. and Gugerli, F. (2011) Using the 454 pyrosequencing-based technique in the development of nuclear microsatellite loci in the alpine plant Arabis alpine (Brassicaceae). American Journal of Botany, 98, e103-e105.
doi:10.3732/ajb.1000488
|
[21]
|
Jennings, T.N., Knaus, B.J., Mullins, T.D., Haig, S.M. and Cronn, R.C. (2011) Multiplexed microsatellite recovery using massively parallel sequencing. Molecular Ecology Resources, 11, 1060-1067.
doi:10.1111/j.1755-0998.2011.03033.x
|
[22]
|
Zalapa, J.E., Cuevas, H., Zhu, H., Steffan, S., Senalik, D., Zeldin, E., McCown, B., Harbut, R. and Simon, P. (2012) Using next-generation sequencing approaches to isolate simple sequence repeat (SSR) loci in the plant sciences. American Journal of Botany, 99, 193-208.
doi:10.3732/ajb.1100394
|
[23]
|
Swarts, N.D., Sinclair, E.A. and Dixon, K.W. (2007) Characterization of microsatellite loci in the endangered grand spider orchid Caladenia huegelii (Orchidaceae). Molecular Ecology Notes, 7, 1141-1143.
doi:10.1111/j.1471-8286.2007.01810.x
|
[24]
|
Xia, K., Ye, X. and Zhang, M. (2008) Isolation and characterization of nine microsatellite markers for Cymbidium sinense. Horticulture Science, 43, 1925-1926.
|
[25]
|
Tang, M., Zeng, C.-X., Bi, Y.-F. and Yang, J.-B. (2012) Microsatellite markers for the Chinese endangered and endemic orchid Cymbidium tortisepalum (Orchidaceae). American Journal of Botany, 99, e11-e13.
doi:10.3732/ajb.1100307
|
[26]
|
Pinheiro, F., Santos, M.O., Barros, F., et al. (2008) Isolation and characterization of microsatellite loci in the Brazilian orchid Epidendrum fulgens. Conservation Genetics, 9, 1661-1663. doi:10.1007/s10592-008-9514-4
|
[27]
|
Gustafson, S. and Thorén, P.A. (2001) Microsatellite loci in Gymnadenia conopsea, the fragrant orchid. Molecular Ecology Notes, 1, 81-82.
doi:10.1046/j.1471-8278.2001.00033.x
|
[28]
|
Campbell, V.V., Rowe, G., Beebee, T.J.C. and Hutchings, M.J. (2002) Isolation and characterization of microsatellite primers for the fragrant orchid Gymnadenia conopsea (L.) R. Brown (Orchidaceae). Conservation Genetics, 3, 209-210. doi:10.1023/A:1015224531795
|
[29]
|
Lombardo, V.T., Hopkins, S.E., Selosse, M.-A., Cozzolino, S. and Taylor, D.L. (2008) Isolation and characterization of new polymorphic microsatellite loci in the mixotrophic orchid Limodorum abortivum L. Swartz (Orchidaceae). Molecular Ecology Resources, 8, 1117-1120.
doi:10.1111/j.1755-0998.2008.02176.x
|
[30]
|
López-Roberts, M.C., Almeida, P.R.M., Oliveira, E.J.F. and van de Berg, C. (2012) Microsatellite marker development for the threatened orchid Masdevallia solomonii (Orchidaceae). American Journal of Botany, 99, e66-e68.
doi:10.3732/ajb.1100364
|
[31]
|
Soliva, M., Gautschi, B., Salzmann, C., Tenzer, I. and Widmer, A. (2000) Isolation and characterization of microsatellite loci in the orchid Ophrys araneola (Orchidaceae) and a test of cross-species amplification. Molecular Ecology, 9, 2178-2179.
doi:10.1046/j.1365-294X.2000.105313.x
|
[32]
|
Cotrim, H.C., Monteiro, F.A., Sousa, E.S., Fay, M.F., Chase, M.W. and Pais, M.S. (2009) Isolation and characterization of novel polymorphic nuclear microsatellite markers from Ophrys fusca (Orchidaceae) and crossspecies amplification. Conservation Genetics, 9, 739-742.
doi:10.1007/s10592-008-9634-x
|
[33]
|
Li, L.-N., Zeng, S., Zheng, F., Chen, Z.-L., Wu, K.-L., Zhang, J.-X. and Dual, J. (2010) Isolation and characterization of 10 polymorphic microsatellite loci in Paphiopedilum concolor (Batem.) Pfitzer (Orchidaceae) and cross-species amplification. Horticulture Science, 45, 1286-1287.
|
[34]
|
Rodrigues, K.F. and Kumar S.V. (2009) Isolation and characterization of 24 microsatellite loci in Paphiopedilum rothschildianum, and endangered slipper orchid. Conservation Genetics, 10, 127-130.
doi:10.1007/s10592-008-9533-1
|
[35]
|
Pellegrino, G.D., Cafasso, A., Widmer, M., Soliva, A., Musacchio, A. and Cozzolino, S. (2001) Isolation of microsatellite loci from the orchid Serapias vomeracea (Orchidaceae) and cross-priming to the other Serapias species. Molecular Ecology Notes, 1, 279-280.
doi:10.1046/j.1471-8278.2001.00106.x
|
[36]
|
Phuekvilai, P., Pradit, P. and Surin, P. (2009) Development of microsatellite markers for Vanda orchid. Kasetsart Journal of Natural Science, 43, 497-506.
|
[37]
|
Bory, S., Da Silva, D., Risterucci, A.M., Grisoni, M., Besse, P. and Duval, M.F. (2008) Development of microsatellite markers in cultivated Vanilla: Polymorphism and transferability to other Vanilla species. Scientia Horticulturae, 115, 420-425.
doi:10.1016/j.scienta.2007.10.020
|
[38]
|
Huang, X. and Madan, A. (1999) CAP3: A DNA sequence assembly program. Genome Research, 9, 868-877.
doi:10.1101/gr.9.9.868
|
[39]
|
Faircloth, B. (2008) Msatcommander: Detection of microsatellite repeat arrays and automated, locus-specific primer design. Molecular Ecology Resources, 8, 92-94.
doi:10.1111/j.1471-8286.2007.01884.x
|
[40]
|
Rozen, S. and Skaletsky, H.J. (2000) Primer3 on the WWW for general users and for biologist programmers. Methods in Molecular Biology, 132, 365-386.
|
[41]
|
Toth, G., Gaspari, Z. and Jurka, J. (2000) Microsatellites in different eukaryotic genomes: Survey and analysis. Genome Research, 10, 967-981. doi:10.1101/gr.10.7.967
|
[42]
|
Pan, L., Xia, Q., Quan, Z., Liu, H., Ke, W. and Ding, Y. (2010) Development of novel EST-SSRs from sacred lotus (Nelumbo nucifera Gaertn) and their utilization for the genetic diversity analysis of N. nucifera. Journal of Heredity, 101, 71-82. doi:10.1093/jhered/esp070
|
[43]
|
Lagercrantz, U., Ellegren, H. and Andersson, L. (1993) The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates. Nucleic Acid Research, 21, 1111-1115. doi:10.1093/nar/21.5.1111
|
[44]
|
Goldstein, D.B. and Clark, A.G. (1995) Microsatellite variation in North American populations of Drosophila melanogaster. Nucleic Acid Research, 23, 3882-3886.
doi:10.1093/nar/23.19.3882
|
[45]
|
Bachtrog, D., Agis, M., Imhof, M. and Schloetterer, C. (2000) Microsatellite variability differs between dinucleotide repeat motifs-evidence from Drosophila melanogaster. Molecular Biology and Evolution, 170, 1277-1285. doi:10.1093/oxfordjournals.molbev.a026411
|
[46]
|
Xu, Z., Gutierrez, L., Hitchens, M., Scherer, S., Sater, A.K., et al. (2008) Distribution of polymorphic and nonpolymorphic microsatellite repeats in Xenopus tropicalis. Bioinformatics and Biology Insights, 2, 157-169.
|