[1]
|
Keim, P., Okinaka, R. and Pearson, T. (2013) The Evolution and Global Dissemination of Bacillus anthracis. The International Conference on Bacillus anthracis, B. cereus, and B. thuringiensis, Victoria, 1-5 September 2013.
|
[2]
|
Rasko, D.A., Worsham, P.L., Abshire, T.G., Stanley, S.T., Bannan, J.D., Wilson, M.R., Langham, R.J., Decker, R.S., Jiang, L., Read, T.D., et al. (2011) Bacillus anthracis Comparative Genome Analysis in Support of the Amerithrax Investigation. Proceedings of the National Academy of Sciences of the United States of America, 108, 5027-5032. http://dx.doi.org/10.1073/pnas.1016657108
|
[3]
|
Keim, P., Price, L.B., Klevytska, A.M., Smith, K.L., Shupp, J.M., Okinaka, R., Jackson, P.J. and Hugh-Jones, M.E. (2000) Multiple-Locus Variable-Number Tandem Repeat Analysis Reveals Genetic Relationships within Bacillus anthracis. Journal of Bacteriology, 182, 2928-2936. http://dx.doi.org/10.1128/JB.182.10.2928-2936.2000
|
[4]
|
Lista, F., Faggioni, G., Valjevac, S., Ciammaruconi, A., Vaissaire, J., le Doujet, C., Gorge, O., De Santis, R., Carattoli, A., Ciervo, A., et al. (2006) Genotyping of Bacillus anthracis Strains Based on Automated Capillary 25-Loci Multiple Locus Variable-Number Tandem Repeats Analysis. BMC Microbiology, 6, 1-15.
|
[5]
|
Le Flèche, P., Hauck, Y., Onteniente, L., Prieur, A., Denoeud, F., Ramisse, V., Sylvestre, P., Benson, G., Ramisse, F. and Vergnaud, G. (2001) A Tandem Repeats Database for Bacterial Genomes: Application to the Genotyping of Yersinia pestis and Bacillus anthracis. BMC Microbiology, 1, 2.
|
[6]
|
Stratilo, C.W., Lewis, C.T., Bryden, L., Mulvey, M.R. and Bader, D. (2006) Single-Nucleotide Repeat Analysis for Subtyping Bacillus anthracis Isolates. Journal of Clinical Microbiology, 44, 777-782. http://dx.doi.org/10.1128/JCM.44.3.777-782.2006
|
[7]
|
Kenefic, L.J., Beaudry, J., Trim, C., Daly, R., Parmar, R., Zanecki, S., Huynh, L., Van Ert, M.N., Wagner, D.M., Graham, T., et al. (2008) High Resolution Genotyping of Bacillus anthracis Outbreak Strains Using Four Highly Mutable Single Nucleotide Repeat Markers. Letters in Applied Microbiology, 46, 600-603. http://dx.doi.org/10.1111/j.1472-765X.2008.02353.x
|
[8]
|
Garofolo, G., Ciammaruconi, A., Fasanella, A., Scasciamacchia, S., Adone, R., Pittiglio, V. and Lista, F. (2010) SNR Analysis: Molecular Investigation of an Anthrax Epidemic. BMC Veterinary Research, 6, 11. http://dx.doi.org/10.1186/1746-6148-6-11
|
[9]
|
Keim, P., Van Ert, M.N., Pearson, T., Vogler, A.J., Huynh, L.Y. and Wagner, D.M. (2004) Anthrax Molecular Epidemiology and Forensics: Using the Appropriate Marker for Different Evolutionary Scales. Infection, Genetics and Evolution: Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases, 4, 205-213.
|
[10]
|
Van Ert, M.N., Easterday, W.R., Huynh, L.Y., Okinaka, R.T., Hugh-Jones, M.E., Ravel, J., Zanecki, S.R., Pearson, T., Simonson, T.S., U’Ren, J.M., et al. (2007) Global Genetic Population Structure of Bacillus anthracis. PLoS One, 2, Article ID: e461.
|
[11]
|
Kuroda, M., Serizawa, M., Okutani, A., Sekizuka, T., Banno, S. and Inoue, S. (2010) Genome-Wide Single Nucleotide Polymorphism Typing Method for Identification of Bacillus anthracis Species and Strains among B. cereus Group Species. Journal of Clinical Microbiology, 48, 2821-2829. http://dx.doi.org/10.1128/JCM.00137-10
|
[12]
|
Marston, C.K., Allen, C.A., Beaudry, J., Price, E.P., Wolken, S.R., Pearson, T., Keim, P. and Hoffmaster, A.R. (2011) Molecular Epidemiology of Anthrax Cases Associated with Recreational Use of Animal Hides and Yarn in the United States. PLos One, 6, Article ID: e28274. http://dx.doi.org/10.1371/journal.pone.0028274
|
[13]
|
Price, E.P., Seymour, M.L., Sarovich, D.S., Latham, J., Wolken, S.R., Mason, J., Vincent, G., Drees, K.P., Beckstrom-Sternberg, S.M., Phillippy, A.M., et al. (2012) Molecular Epidemiologic Investigation of an Anthrax Outbreak among Heroin Users, Europe. Emerging Infectious Diseases, 18, 1307-1313. http://dx.doi.org/10.3201/eid1808.111343
|
[14]
|
Vogler, A.J., Busch, J.D., Percy-Fine, S., Tipton-Hunton, C., Smith, K.L. and Keim, P. (2012) Molecular Analysis of Rifampicin Resistance in Bacillus anthracis and Bacillus cereus. Antimicrobial Agents and Chemotherapy, 46, 511-513. http://dx.doi.org/10.1128/AAC.46.2.511-513.2002
|
[15]
|
Keim, P., Kalif, A., Shupp, J., Hill, K., Travis, S.E., Richmond, K., Adair, D.M., Hugh-Jones, M., Kuske, C.R. and Jackson, P. (1997) Molecular Evolution and Diversity in Bacillus anthracis as Detected by Amplified Fragment Length Polymorphism Markers. Journal of Bacteriology, 179, 818-824.
|
[16]
|
Keim, P., Gruendike, J.M., Klevytska, A.M., Schupp, J.M., Challacombe, J. and Okinaka, R. (2009) The Genome and Variation of Bacillus anthracis. Molecular Aspects of Medicine, 30, 397-405. http://dx.doi.org/10.1016/j.mam.2009.08.005
|
[17]
|
Smith, K.L., DeVos, V., Bryden, H., Price, L.B., Hugh-Jones, M.E. and Keim, P. (2000) Bacillus anthracis Diversity in Kruger National Park. Journal of Clinical Microbiology, 38, 3780-3784.
|
[18]
|
Derzelle, S., Laroche, S., Le Fleche, P., Hauck, Y., Thierry, S., Vergnaud, G. and Madani, N. (2011) Characterization of Genetic Diversity of Bacillus anthracis in France by Using High-Resolution Melting Assays and Multilocus Variable-Number Tandem-Repeat Analysis. Journal of Clinical Microbiology, 49, 4286-4292. http://dx.doi.org/10.1128/JCM.05439-11
|
[19]
|
Garofolo, G., Serrecchia, L., Corro, M. and Fasanella, A. (2011) Anthrax Phylogenetic Structure in Northern Italy. BMC Research Notes, 4, 273. http://dx.doi.org/10.1186/1756-0500-4-273
|
[20]
|
Pilo, P., Perreten, V. and Frey, J. (2008) Molecular Epidemiology of Bacillus anthracis: Determining the Correct Origin. Applied and Environmental Microbiology, 74, 2928-2931. http://dx.doi.org/10.1128/AEM.02574-07
|
[21]
|
Gierczyński, R., Kaluzewski, S., Rakin, A., Jagielski, M., Zasada, A., Jakubczak, A., Borkowska-Opacka, B. and Rastawicki, W. (2004) Intriguing Diversity of Bacillus anthracis in Eastern Poland—The Molecular Echoes of the Past Outbreaks. FEMS Microbiology Letters, 239, 235-240.
|
[22]
|
Sue, D., Marston, C.K., Hoffmaster, A.R. and Wilkins, P.P. (2007) Genetic Diversity in a Bacillus anthracis Historical Collection (1954 to 1988). Journal of Clinical Microbiology, 45, 1777-1782.
|
[23]
|
Derzelle, S. and Thierry, S. (2013) Genetic Diversity of Bacillus anthracis in Europe: Genotyping Methods in Forensic and Epidemiologic Investigations. Biosecurity and Bioterrorism: Biodefense Strategy, Practice, and Science, 11, S166-S176.
|
[24]
|
Girault, G., Blouin, Y., Vergnaud, G. and Derzelle, S. (2014) High-Throughput Sequencing of Bacillus anthracis in France: Investigating Genome Diversity and Population Structure Using Whole-Genome SNP Discovery. BMC Genomics, 15, 288.
|
[25]
|
NCBI. http://www.ncbi.nlm.nih.gov/
|
[26]
|
Erali, M., Voelkerding, K.V. and Wittwer, C.T. (2008) High Resolution Melting Applications for Clinical Laboratory Medicine. Experimental and Molecular Pathology, 85, 50-58.
|
[27]
|
Hurtle, W., Bode, E., Kulesh, D.A., Kaplan, R.S., Garrison, J., Bridge, D., House, M., Frye, M.S., Loveless, B. and Nordwood, D. (2004) Detection of the Bacillus anthracis gyrA Gene by Using a Minor Groove Binder Probe. Journal of Clinical Microbiology, 42, 179-185.
|
[28]
|
Easterday, W.R., Van Ert, M.N., Zanecki, S. and Keim, P. (2005) Specific Detection of Bacillus anthracis Using a TaqMan Mismatch Amplification Mutation Assay. Biotechniques, 38, 731-735.
|
[29]
|
Birdsell, D.N., Pearson, T., Price, E.P., Hornstra, H.M., Nera, R.D., Stone, N., Gruendike, J., Kaufman, E.L., Pettus, A.H., Hurbon, A.N., et al. (2012) Melt Analysis of Mismatch Amplification Mutation Assays (Melt-MAMA): A Functional Study of a Cost-Effective SNP Genotyping Assay in Bacterial Models. PLoS One, 7, Article ID: e32866.
|
[30]
|
Kenefic, L.J., Pearson, T., Okinaka, R.T., Schupp, J.M., Wagner, D.M., Hoffmaster, A.R., Trim, C.B., Chung, W.K., Beaudry, J.A., Jiang, L., et al. (2009) Pre-Columbian Origins for North American Anthrax. PLoS One, 4, Article ID: e4813.
|
[31]
|
Simonson, T.S., Okinaka, R.T., Wang, B., Easterday, W.R., Huynh, L., U’Ren, J.M., Dukerich, M., Zanecki, S.R., Kenefic, L.J., Beaudry, J., et al. (2009) Bacillus anthracis in China and Its Relationship to Worldwide Lineages. BMC Microbiology, 9, 71.
|
[32]
|
Okinaka, R.T., Henrie, M., Hill, K.K., Lowery, K.S., Van Ert, M., Pearson, T., Shupp, J., Kenefic, L., Beaudry, J., Hofstadler, S.A., et al. (2008) Single Nucleotide Polymorphism Typing of Bacillus anthracis from Sverdlovsk Tissue. Emerging Infectious Diseases, 14, 653-656.
|