Catalytically Important Residues in E. coli 1-Deoxy-D-Xylulose 5-Phosphate Synthase

Jordi Querol-Audí, Albert Boronat, Josep J. Centelles, Santiago Imperial

Department of Biochemistry and Molecular Biology, School of Biology, University of Barcelona, Barcelona, Spain.

DOI: 10.4236/jbm.2014.24006                

Abstract

1-deoxy-D-xylulose 5-phosphate synthase (DXS) catalyzes the initial step of the 2-C-methyl-D- erythritol 4-phosphate (MEP) pathway consisting in the condensation of (hydroxiethyl)thiamin derived from pyruvate with D-glyceraldehyde 3-phosphate (GAP) to yield 1-deoxy-D-xylulose 5-phosphate (DXP). The role of the conserved residues H49, E370, D427 and H431 of E. coli DXS was examined by site-directed mutagenesis and kinetic analysis of the purified recombinant enzyme mutants. Mutants at position H49 showed a severe reduction in their specific activities with a decrease of the kcat/KM ratio by two orders of magnitude lower than the wild-type DXS. According to available structural data residue H49 is perfectly positioned to abstract a proton from the donor substrate. Mutations in DXS E370 showed that this residue is also essential for catalytic activity. Three-dimensional structure supports its involvement in cofactor deprotonation, the first step in enzymatic thiamin catalysis. Results obtained with H431 mutant enzymes indicate that this residue plays a role contributing to transition state stabilization. Finally, mutants at position D427 also showed a severe specific activity decrease with a reduction of the kcat/KM ratio. A role in binding the substrate and selecting the stereoisomer is proposed for D427.

Keywords

Active Site, 1-Deoxy-D-Xylulose 5-Phosphate Synthase, Isoprenoid Biosynthesis, Kinetic Parameters, MEP Pathway, Methylerythritol Phosphate, Mutagenesis

Conflicts of Interest

The authors declare no conflicts of interest.

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