Health Risk Assessment of Compost-Amended Soils

Application of improperly treated compost from composting toilet is one of the causes of bacterial contamination in the field, crops, food and water. The study characterized the die-off represented by kinetic inactivation rate coefficient, k (h −1 ) of Enterococcus in clay and sandy loam soils, determined the effect of temperature, compost-to-soil ratio and soil type on the inactivation rates of Enterococcus and evaluated the health risk associated with the amendment of compost from composting toilet in real conditions using local climatic data. The soils were amended with compost to soil ratios of 1:10, 1:25, 1:50 and 1:100 held at different temperatures (30˚C, 40˚C and 50˚C). Inactivation of Enterococcus (pathogenic bacteria) in the soil with high temperature under different compost application rates was tried in the laboratory test and the Quantitative Microbial Health Risk evaluated. The study results indicated the inactivation rates of Enterococcus in clay soils as 0.015 - 0.027 h −1 , 0.246 - 0.322 h −1 , 0.397 - 0.571 h −1 whilst sandy loam soils recorded 0.056 - 0.130 h −1 , 0.348 - 0.447 h −1 and 0.475 - 0.630 h −1 for 30˚C, 40˚C and 50˚C respectively. Inactivation rates of Enterococcus in soils amended with compost from the composting toilet depended on temperature and soil type but not on the compost-to-soil ratios and compost from the composting toilet amended to the soils is safe for use in six (6) days.


Introduction
The rural model of composting toilet has been designed and installed in consideration of local material availability and affordability [1]. Although the com-How to cite this paper: Darimani, H.S. and Ito, R. (2020) Health Risk Assessment posting process reduces enteric pathogens [2] [3] the compost removed from the toilet has a potential to trap pathogens derived from infected persons, which increases the possibility for users and farmers to become infected [4]. Reuse guidelines for human excreta has been published by WHO (2006) [5] and also optional post-treatments such as solar heating, drying [3] [6] and increasing pH with alkaline treatment by lime or ash [7] [8] have been investigated to ensure pathogen inactivation. Increasing temperature of the soil layer amended with compost by solarisation also occurs slight drying of the surface of the layer owing to low moisture content of soil layer in arid area. Therefore, thermal treatment may be the main process of inactivation in this case. In a practical view, however, these guidelines and the practice may be misapplied sometimes due to local situations such as lack of attention by traditional users, labour ineffectiveness and lack of materials. In the case of on-site individual composting toilet, particularly, the improperly treated compost contains high levels of enteric bacterial indicators as previously observed [6]. When the improperly treated compost is amended to the field, the soil, possibly intermediates several exposure pathways; contamination in ground water, attachment on vegetable and farmer's ingestion of the contaminated soil. Assuming the improperly treated compost amendment as a worst case, the fate of pathogens in the soil after amendment of compost should be investigated to consider the overall control of pathogens. Little information exists on inactivation of bacteria in compost-amended soils.
Comprehensive information on die-off periods of several pathogens in the soil-plant-waste system has been previously reported [9]. The die-off periods for these organisms range from 30 mins to several years [10]. This makes it difficult to apply it to a particular case. A number of factors are known to influence the inactivation of pathogens and the indicator organism in a soil-waste system: waste pre-treatment, moisture, temperature, sunlight, pH, competitive organisms, available nutrients, organic matter, method and time of application of waste and soil type [9]. On the other hand, there is little information regarding the characterisation of the die-off in soil such as clay and sandy loam in the hot climates of rural communities, where reuse of the compost is expected. Inactivation rate coefficient, k (h −1 ), would be useful for researchers developing a management type of model to simulate the behaviour of bacteria in the soil system [10]. Enterococcus was used as a model for pathogenic bacteria in this experiment to assess the hygienic quality of the compost because it occurs in high numbers in the intestine and associated with human faeces, and has been known as relatively high tolerant bacteria for the environmental conditions [11]. It is often used to determine water quality and waste product quality [12].
The study by Kagambéga et al. [13] indicated that wild animals can share the same Salmonella serotypes in humans and potentially transmit some of them to humans. As the humans and animals often live in close vicinity in rural Africa and the hygiene control of the meat retail chain is defective, high Salmonella carriage rates of the animals can pose a major public health risk in Africa. This underlines the necessity for a joint and coordinated surveillance and monitoring Journal of Agricultural Chemistry and Environment programs for salmonellosis in Africa. Salmonella has the potential of re-growth of bacteria under lower temperature conditions. Considering this increase in concentration under lower temperature and the fact that it is a public health concern in Burkina Faso, the health risk of Salmonella in the soil should be studied to determine the health risk for the reuse of compost after the post-treatment.
Considering actual practices, solarisation is one of the main processes for disinfection of enteric pathogens, because sunlight could be obtained in any place of farmland. The solarisation relates to the ambient temperature, while the temperature is not constant as shown in Figure 1. Farmland generally has several types of soil. Farmers sometimes change the composition of fertilizers resulting in change of ratio of compost in soil. These factors might affect the inactivation of pathogens in the soil. Therefore, the objectives of this study were 1) to characterise the die-off represented by the kinetic inactivation rate coefficient of Enterococcus in soil system amended with compost from the composting toilet, 2) to determine the effect of temperature, compost-to-soil ratio and soil type on the inactivation rates of Enterococcus, 3) to determine the health risk of Salmonella in the soil system after the amendment of compost.

Compost and Soil Preparation
Compost used for the experiment was collected from a pilot site installed in a family in Kamboinse, Burkina Faso. Nine people use the toilet and the compost has been used for 8 months on the site. Soil samples (Clay and sandy loam) were taken from the Kamboinse pilot experimental site on the campus of the International Institute for Water and Environmental Engineering (2iE). The characteristics of the sandy loam and clay soils used are described in Table 1. Moisture contents, MC (%), in dry basis for both compost and soils were determined by drying 5 g of the compost/soil sample at 105˚C for 24 h in an oven (manufactured by Memmert GmbH) and described by the equation below: where, W wet and W dry are wet and dry weights of compost sample (g). The moisture content was set to 25% with ultra-pure water, because the moisture content at field capacity for sandy loam and clay soils are 14.7% and 22.6% respectively [14].

Compost Amendment and Inoculations
Enterococcus ATCC 19433 strain was purchased from American Type Culture Collection (ATCC) and was grown in a 10 ml Nutritif Nutrient broth (Difco, France) by incubating at 37˚C over night. Zero-point three millilitre (0.3 ml) of the broth solution was inoculated into 20 g of the compost by a pipette on the surface and then mixed for 5 mins with a sterile spatula to homogeneously distribute the Enterococcus. The concentration of Enterococcus in the inoculated solution was about 10 6 CFU/ml. After 3 h, each 20 g-dry of the inoculated compost was mixed well with the soil at the specified ratios described in Table 2. We checked the pH of the compost-amended soils and the compost with following protocol by adding 5 g of the sample in 250 ml of distilled water. The suspension was allowed to settle for 5 mins. The pH of the liquid was determined by hand held multi-parameter monitor (WTW 330i, WTW GmbH, Germany) with composite pH sensor (Sen Tix 41, WTW GmbH, Germany). The pH of the liquids ranged from 7.06 to 7.18. The amended soils were placed in sterilized bottles with lids (1 litre, 2 litre and 4 litre bottles) then mixed for 5 mins with a sterile spatula to homogeneously distribute the compost over the soil. The bottles were tightly closed and immediately put into an incubator to keep the temperature constant. Ten grams of the sample were taken from each bottle every 2 hours for biological analysis.

Bacteria Extraction and Measurement
Enterococcus was cultured following the modification of method 9215A in Standard Methods for the Examination of Water and Wastewater [15]. Bacteria were extracted from the soil samples with buffered peptone water. The composition of buffered peptone water in g/litre is Tryptone 10.0, Sodium Chloride 5.0, Journal of Agricultural Chemistry and Environment were incubated at 37˚C for 24 h, and then, Enterococcus colonies were counted.
The limit of detection of bacteria was 10 CFU/g.

Data Analysis
Concentration versus time data obtained from the inactivation experiments were fitted to a first order kinetic model. Nakagawa et al. [16] indicated that inactivation of microorganisms follows a first order reaction and it is expressed as: where, C is concentration of microorganism in soil sample in dry basis at time, t (CFU/g-dry solid), C o is initial concentration of microorganisms in soil samples in dry basis (CFU/g-dry solid), t is reaction time (h). After the estimation of inactivation rate coefficients, k, we tried to evaluate the effect of temperature with the Arrhenius equation described as follows; where, A is pre-exponential factor (h −1 ), E a is activation energy (J/mol), R is the universal gas constant (J/mol/K), T is the temperature (K). A statistical study (nonparametric Kruskal-Wallis test) was carried out to determine significant difference (p ≤ 0.05) in temperature, the compost-to-soil ratio and the soil type. The analysis was done with IBM SPSS, version 12.0 (IBM Corporation). and 0.23475, respectively. The random number is applied for estimation of variables with distributions for simulation with the appropriate equations. The simulation was repeated 10,000 times [17]. Then, 95 percentile of the probability was estimated as the infection risk.

Temperature Distribution
One-week temperature was measured during February, 2015 in the soil with the aid of ThermoManager sensors. They were placed in the soil at the bottom, middle and top at 10 cm, 5 cm and 1 cm respectively. The temperature distribution is show in Figure 1 below. The fluctuation of the temperature distribution is observed for the bottom, middle and top respectively. This rise and fall of the temperature is as a result of the day and night.

Results and Discussions
Enterococcus concentration in the compost amended clay soils at 30˚C for 8 h did not record any change in concentration for all ratios, as shown in Figure   2(a). Figure 2 Table 3 summarises the inactivation rate coefficients. Arrhenius plots for Enterococcus inactivation for both clay soil and sandy loam soil are respectively shown in Figure 4 and Figure 5. Other factors influencing the die-off of pathogenic bacteria in the soil are soil composition and pH [18]. Under field conditions, other variables, such as solar radiation and dryness, may also affect the survival of pathogens [14].
Increase in temperature showed to increase the inactivation rate of all soil types. The first order kinetics inactivation rate coefficient, k, of Enterococcus Journal of Agricultural Chemistry and Environment      Figure 4 and Figure 5. The solid lines are trend lines expressing the effect of temperature on Enterococcus at different compost-to-soil ratio. There were strong correlations with temperatures, thus the effect of temperature on the inactivation of Enterococcus is described with the trend lines.
Enteric bacteria have a faster die-off in soils possessing a high pH with pH of 6 to 7 being optimum for bacteria survival, and dying quickly under acid soil conditions [10]. In our study pH of compost-amended soils ranged from 7.06 to 7.18 and hence could not cause the die-off of Enterococcus because pH levels are good for bacterial survival in soils.
Results showed that, the type of soil influenced the inactivation rate of Enterococcus. The inactivation rate coefficient in all compost-amended sandy loam soil formulations was higher than the clay soil formulations. This indicated that the soil type had an influence on the survival of bacteria. Soil type affected the die-off rate because finer soils, especially, clay minerals and humic substances increase the survival of bacteria [20] [21]. Survival of E. coli O157:H7 in finer-textured soils (such as the ones rich in clay) resulted in a greater survival rate of coarse-textured soils (Sandy soils) [22]. The clay particles used in the experiments were smaller than the sandy loam soil. Thus, the larger particle size distribution of the sandy loam soil probably increased the inactivation rates. Clay content increased the survival of Enterococcus comparatively. The statistical results indicated that inactivation rates of the clay soil (Kruskal-Wallis test, p < 0.05; p = 0.01) were lesser than sandy loam (Kruskal-Wallis test, p < 0.05; p = 0.007) in all temperatures. Jamieson et al. [23] reported that the single soil property that appears to have the greatest impact on bacterial survival is moisture retention, which is linked to particle size distribution and organic matter content. The capacity to remove organism increases with the decrease in soil-water content. Laboratory and field experiments have shown that many soils have high  [19]. Retention of bacteria increased with an increase in clay content, cation exchanged capacity of the soil and specific surface area [23]. Another study by Mubiru et al. [24] compared the mortality of E. coli O157:H7 in two different soil types. They indicated that reduced mortality was primarily influenced by soil type, with soils exhibiting a higher metric potential, showing lower mortality rates. They also stated that as well as enhancing moisture retention, fine soil particles could increase bacterial survival because of an increased ability to retain nutrients. Reddy et al. [10] reported that retention of organism is enhanced when the clay is present. Compost-to-soil ratio showed a variation on the inactivation rate coefficient in our study. In the compost-amended clay soil formulations, the inactivation rate constant values were higher when the soil volume was increased (Table 3). This showed that high compost applications recorded lesser inactivation rate coefficient than low compost applications. We found that the clay soil formulation 1:50 at 30˚C and 1:100 at 40˚C values looks deviated a little from the trend observed in 50˚C probably due to the mixing of Enterococcus strain with the clay soil. The statistical results, however, showed that there was no effect among the performance of the different application rate of the compost. Results showed that the differences of compost-to-soil ratio on Enterococcus inactivation was not statistically significant Kruskal-Wallis test, p > 0.05 for both sandy loam and clay soils. Crane et al. [25] followed the die-off of indicator organisms in surface applied poultry manure and indicated that the rate of manure application had no influence on bacterial survival and this conformed to our study.
The average diurnal ambient temperature in Ouagadougou varied from 36˚C to 47.2˚C, these temperatures could reduce the concentration of pathogens in an improperly treated compost amended to the soil as fertilizer to minimise the serious health risk as previously observed [26]. Temperature and humidity change over time due to strong sunlight under field conditions. Therefore, care should be taken in interpreting our results with field studies.
The study simulated the conditions in real situations with the measured temperature in the soil. The result of the change in concentration and annual risk of Salmonella in the soil was estimated. Figure 6 and Figure

Summary
Inactivation of Enterococcus (pathogenic bacteria) in the soil with high temperature under different compost application rates was tried in the laboratory test.
As a result, 1) the inactivation rates of Enterococcus in clay soils were 0.015 -0.027 h −1 , 0.246 -0.322 h −1 , 0.397 -0.571 h −1 for 30˚C, 40˚C and 50˚C, respectively. Sandy loam soils were 0.056 -0.130 h −1 , 0.348 -0.447 h −1 and 0.475 -0.630 h −1 for 30˚C, 40˚C and 50˚C, respectively. 2) Inactivation rates of Enterococcus in soils amended with compost from the composting toilet depended on temperature and soil type, but not on the compost to soil ratios. This study would be a useful information for researchers and farmers to understand the behaviour of pathogenic bacteria in the sandy loam and clay soils. The experimental conditions in this study are different from the real field situation because temperature and humidity change over time due to strong sunlight under field conditions. Therefore, care must be taken when interpreting the results of this study to estimate the die-off rates in real field conditions. 3) Compost after 24 h of post-treatment period amended to the soil would be safe in 6 days. Further research is required to understand the behaviour of pathogenic bacteria in field conditions of a hot semi-arid climate. This study succeeded to evaluate the risk of pathogens with initial biological parameters and operational conditions.