Generation of Unfolded DNA in Human Neutrophils Following Hypothermal Treatment

By visualizing DNA with diamidino phenylindole (DAPI), we found that hypothermal incubation followed by rewarming of human neutrophils resulted in an increased number of DAPI-positive objects representative of extensive DNA unfolding seemingly similar to neutrophil extracellular traps (NETs). In contrast to canonical NET formation, diphenylene iodonium (DPI), an NADPH oxidase inhibitor, exhibited negligible effects on formation of the DAPI-positive objects. Moreover, multiple instances of DNA damage were detected in the objects, but not in canonical NETs. Our results thus suggest the potential of hypothermia for triggering DNA structural alteration in neutrophils, which is similar to but distinct from NET formation.


Introduction
Low-temperature conditions, referred to as hypothermia, are generally used for the storage of cells, tissues, organs and bodies for both scientific and clinical purposes.Hypothermia is an important means of slowing down cellular metabolism during storage, thus inhibiting injurious processes caused by the deficiency of oxygen and substrate supply.However, hypothermia can give rise to cell injury, including cell death [1,2].
Neutrophils are a main type of effector cell in the innate immune system [3,4], which circulate in the blood and engulf invading microorganisms such as bacteria and fungi by phagocytosis.In addition to such activities, Brinkmann et al. have reported that, following activation by microorganisms, neutrophils can undergo morphological changes detectable by microscopic observations [5].These changes include loss of the lobular-shaped nucleus followed by disintegration of the nuclear envelope, which allow nuclear, cytoplasmic and granular components to mix together and subsequently rupture the cell membrane to release the DNA/chromatin into the extracellular environment [5].The result is that the unfolded DNA/chromatin fibers with attached bactericidal proteins can function as neutrophil extracellular traps (NETs) for microorganisms.NETs appear to be the result of a unique form of cell death.Therefore, as opposed to apoptosis and necrosis, Steinberg and Grinstein coined the term "NETosis" for neutrophil cell death, which leads to the formation of NETs [6].
In this study, we found that hypothermal incubation of human neutrophils at 4˚C for up to 1 h followed by incubation at 37˚C resulted in an increased number of DAPI-stainable objects similar to global DNA unfolding observed in PMA-stimulated NETs.However, our additional experimental data revealed that hypothermia/rewarming-induced DNA unfolding was regulated in a manner similar to, but biochemically and pharmacologically distinct from, canonical NETs.Although the molecular mechanism of this phenomenon is not fully understood, we inferred, based on our experimental data, the possible role of ROS, which were generated during hypothermia/rewarming-treatment in a manner independent of NADPH oxidase activity in the formation of the DAPI-positive, NET-like objects.

Peripheral Blood Preparation and Culture
Human peripheral blood preparations (from two normal male donors, collected in compliance with Kumamoto Health Science University and approved by the University Oversight Committee) were enriched for neutrophils by density gradient centrifugation with HISTOPPAQUE 117 (Sigma-Aldrich) and Lymphocyte Separation Solution 1.119 (Nakarai Tesque) according to the procedures described by the supplier.Washed enriched neutrophilic fractions were counted and examined for purity using Wright Giemsa staining (Sigma-Aldrich).

Drug and Hypothermal Treatments
Cells were incubated in culture dishes containing an immersed coverslip in RPMI 1640 (Sigma-Aldrich) supplemented with 5% fetal bovine serum (FBS), 1% penicillin/streptomycin and 0.1% gentamaycin in a humidified atmosphere containing 5% CO 2 .To induce NETs, PMA (Wako Pure Chemical Industries) was added to the culture medium at a concentration of 50 nM and incubated for 4 h at 37˚C.To inhibit NADPH oxidase activity, DPI (Cayman Chemical) was added to the culture medium at a concentration of 20 μM.Hypothermal treatment and rewarming of cells were performed by incubation in a humidified atmosphere containing 5% CO 2 .After drug and/or hypothermal/rewarming treatment, the coverslips were removed from the cultures and subjected to appropriate assays.DNA was visualized by staining with DAPI.

Antibodies and Immunostaining
Cells were washed once for 5 min with ice-cold PBS and then fixed with 4% paraformaldehyde in PBS for 5 min at room temperature.After fixation, the cells were rinsed once with PBS and subjected to indirect-immunofluorescence analysis using anti-neutrophil elastase (Calbio-chem), anti-histone H3 (Santa Cruz Biotechnology), and anti-histone H3 citrulline R26 (Abcam) antibodies.The secondary antibodies were obtained from Santa Cruz Biotechnology and Sigma-Aldrich.

Bacteria Trapping Assay
Escherichia coli BL21 (DE3) were transformed with pET28-EGFP, a plasmid for expression of green fluorescent protein (GFP), and cultured in Luria-Bertani (LB) medium containing kanamycin at 37˚C for 16 h.10 7 E. coli cells were incubated with a coverslip containing hypothermia/rewarming-induced DAPI-positive objects in RPMI 1640 supplemented with 5% FBS at 37˚C.After 20 min at room temperature, the coverslips were washed three times with PBS followed by incubation with 4% paraformaldehyde.DNA fibers were stained with DAPI.
Because the E. coli expressed GFP, bacteria trapped by DNA fibers could be detected by fluorescence microscopy.For DNase I treatment, the coverslips were treated with PBS containing 100 U/ml DNase I (Takara) at 37 o C for 1 hr.The numbers of E. coli with GFP signals on the coverslips were counted by fluorescent microscopy.

TUNEL Assay
Terminal deoxynucleotidyl transferase dUTP nick end labeling (TUNEL) assays were performed using the MEBSTAIN Apoptosis TUNEL Kit II (MBL) according to the manufacturer's instructions.The TUNEL-positive cells were counted under a microscope.The percentage of TUNEL-positive cells was defined by the number of positive cells among the total number of cells in each sample.For one experiment, cells were counted in at least three different microscopic fields of view.

Intracellular ROS Detection Assay
Intracellular ROS production was monitored using the cell permeable fluorescent dye, CellROX Deep Red Reagent (Invitrogen).This agent can readily react with ROS to form a fluorescent product proportional to the amount of ROS generated in the cells.The cells were incubated with 5 μM CellROX Deep Red for 30 min and then harvested.The fluorescence intensity of the cells was measured using a FACSVerse flow cytometer (BD Biosciences).

MitoTracker Analysis
After fixation with 4% paraformaldehyde, cultured human neutrophils were stained with the mitochondrionspecific dye, MitoTracker Red CMXRRos (Invitrogen), according to the manufacturer's instruction.The cells were immediately analyzed using a FACSVerse flow cytometer.

Statistical Analysis
Wright-Giemsa staining (Figure 1(b), left panel).In contrast, we unexpectedly found that small, but substantial, numbers of Wright-Giemsa-stainable materials, which looked different from intact neutrophils, were present on the coverslip (Figure 1(b), right panel).
Unless otherwise stated, all data are presented as the mean ± SD.Within individual experiments, data points were based on a minimum of triplicate representative samples and experiments were repeated at least three times.
When the materials on the coverslip were stained with DAPI without any fixative treatment, we observed bright fluorescent signals under fluorescent microscopy, many of which appeared to consist of multiple DAPI-positive strings (Figure 1(c)).Because DAPI is a fluorescent dye that intercalates into double-stranded DNA, and that living neutrophils are less permeable to the dye than dead neutrophils, we thought it probable that these bright DAPI-stained signals represented global DNA unfolding of dead neutrophils, which somehow adhered to the coverslip.It should be mentioned that there were few neutrophils with normal morphology on the coverslip per view field, implying that most of neutrophils floated in the culture medium under the standard culture conditions.

Effect of Hypothermia on Human Neutrophils in Culture
After isolating human neutrophils from peripheral blood preparations (see Materials and Methods), the cells (4.5 × 10 6 cells) were incubated at 4˚C for 1 h followed by incubation at 37˚C for 5 h in the 6-cm culture dish supplemented with 2 ml of the culture medium, in which a coverslip was immersed (Figure 1(a)).We found that most of the cells were present as non-adherent forms, and were thus floating in the culture medium.These non-adherent cells appeared morphologically intact as shown by We then investigated whether the requirement for DAPI-positive object production was simple exposure to hypothermia or rather the combination of hypothermia/ rewarming.When human neutrophils were maintained at a constant temperature of either 4˚C or 37˚C, significantly less DAPI-positive signals were detected as compared with cells cultured either at 4˚C, 15˚C, or 25˚C for 1 h followed by incubation at 37˚C for 5 h (Figure 1(d)).These results suggest that the appearance of the DAPIpositive objects was associated with incubation of neutrophils under hypothermal conditions followed by rewarming.To further evaluate the similarities between the DAPIpositive objects and canonical NETs, we performed indirect-immunofluorescence analysis using antibodies that recognize marker proteins for NETs: anti-neutrophil elastase (NE) and anti-histone H3 antibodies [7].As shown in Figures 2(d) and (e), in the presence of these anti-bodies, the signals were detected not only on PMAstimulated NETs but also on the DAPI-positive objects.In contrast, in the absence of the antibodies, these signals were barely detected, suggesting existence of NE and histone H3 on both the DAPI-positive objects and canonical NETs.Taken together, at least with regard to their ability to trap bacteria and the existence of two marker proteins for NETs, our results indicated that the DAPI-positive objects possessed biochemical similarities to canonical NETs.

Comparison of the
It should be noted, however, the experiments described above are not sufficient to conclude that the DAPI-positive objects have anti-bacterial activity.We are therefore investigating whether NE and histones on the DAPIpositive objects can indeed inactivate bacterial toxic proteins, called "virulence factors," and inhibit bacterial growth.In addition, we wish to test whether the DAPIpositive objects can capture microorganisms besides Gram-negative bacteria (E.coli), such as fungi and parasites.

The DAPI-Positive Objects Exhibited Several Biochemical Properties Different from Those of PMA-Stimulated NETs
Although our results so far indicated a correlation between DAPI-positive objects and NETs, several differences were also revealed.For instance, when indirect immunofluorescence analysis was conducted using antihistone H3 citrulline R26 (anti-H3cit) antibody, we found that the antibody stained many, but not all, PMAstimulated NETs, whereas the antibody proved poor at detecting the DAPI-positive objects (Figure 3(a)).Because it has been reported that peptidylarginine deiminase 4 (PAD4/PADI4), which catalyzes histone hy per-citrullination, mediates chromatin decondensation and is vital to NET formation [13,20,21], our observation of different staining patterns with anti-H3cit antibody between the DAPI-positive objects and PMA-stimulated NETs implies activation of PAD4 in PMA-stimulated cells, while the enzyme might not be fully activated in the hypothermia/rewarming-treated cells.
We also detected differences between the objects and NETs in TUNEL assays.As shown in Figure 3(b), TUNEL-positive signals were negligible in PMA-treated cells, confirming the previous report that no TUNELpositive DNA damage is detectable in canonical NETs [15].In contrast, TUNEL assay visualized more than 90% of the hypothermia/rewarming-induced DAPI-positive objects, indicating the existence of multiple sites of TUNEL-positive DNA damage on extensively unfolded DNAs in the objects.Because TUNEL-positive signals are frequently associated with apoptotic cells, these data indicated that hypothermia/rewarming-incubation might trigger, to some extent, activation of apoptosis-related DNA cleavage enzyme(s) in neutrophils, suggesting the possible contribution of apoptotic signaling pathways, at least in part, to DNA structural alterations during the formation of the DAPI-positive, NET-like structures.

Involvement of ROS Elevation to Generate the DAPI-Positive Objects
Given that ROS generation is an absolute requirement for the formation of NETs [15,16], we next assessed whether hypothermia/rewarming of neutrophils coincided with the generation of ROS.Thus, we measured ROS in hypothermia/rewarming-treated human neutrophils.As shown in Figure 4(a), during constant temperature incubation at either 4˚C or 37˚C, no increase/decrease in ROS was detected.In contrast, we found a significant elevation of ROS when cells were kept at 4˚C followed by incubation at 37˚C for 1 h or 3 h; an approximate 10fold increase in ROS was apparent in the cells after incubation at 37˚C.We next examined whether NADPH oxidase contributed to ROS production in hypothermia/rewarmingtreated cells.Given that PMA-induced NET formation is effectively inhibited by DPI, an inhibitor of NADPH oxidase activity [15,17,18  Although where and how ROS are produced in the hypothermia/rewarming-treated cells remains unclear, it is noteworthy that the mitochondrion-specific dye, Mito-Tracker Red, detected structural and/or functional alterations in mitochondria in the hypothermia/rewarmingtreated cells (Figure 4(c)).Because mitochondria are known to produce ROS in aerobic organisms, including humans [22], these data suggest scenario that this organelle may generate ROS during hypothermia/rewarming, leading to the formation of the DAPI-positive, NET-like structures.However, DPI is also known as a potent inhibitor of mitochondrial reactive oxygen species production [23].If DPI inhibits generation of ROS from both mitochondria and the NADPH oxidase pathway during hypothermia/rewarming of neutrophils, we need to consider the possibility of an alternative pathway to generate ROS, besides the NADPH oxidase pathway or the mitochondria pathway.

Conclusion
DAPI-positive objects with extensive DNA unfolding were observed in human neutrophils cultured in hypothermic conditions followed by rewarming.Our experimental data indicated that such DNA structural alterations in neutrophils may be related to NET formation, but can be biochemically and pharmacologically discriminated from NET formation.We also considered that the objects might not represent apoptotic cells, given that apoptotic cells contain condensed DNA enclosed in membrane, which is not observed in the objects.We thus suggest that the hypothermia/rewarming-induced DNA unfolding is regulated in a manner distinct from either canonical NETosis or canonical apoptosis, arguing the existence of a previously unappreciated signaling pathway that alters global genomic DNA structures in eukaryotic cells.Further, the results indicate that coldtreatment followed by warming may affect NET formation, which is an important consideration because many researchers use hypothermal conditions during the isolation and culture of neutrophils.

Figure 1 .
Figure 1.DAPI-stained objects in the hypothermia/rewarming-treated human neutrophils.(a) Schematic representation of procedure for detecting the hypothermia/rewarming-induced DAPI-positive objects.Human neutrophils from peripheral blood preparations were cultured in dishes containing a coverslip at 4˚C for 1 h followed by rewarming at 37˚C for 5 h.Non-adherent and adherent materials in the culture medium stained with Wright Giemsa; (b) Non-adherent and adherent materials in the culture were stained with Wright Giemsa (left and right panels).Bar indicates 50 μm; (c) The morphologies of the DAPI-stained objects adherent to the coverslip were detected by fluorescence microscopy (left panel).Bar indicates 50 μm.The panel on the right shows a higher magnification of the region indicated in the left panel; (d) Human neutrophils from peripheral blood preparations (1 × 106 cells) were cultured in dishes containing a coverslip for 6 h at 4˚C (4), at 4˚C for 1 h followed by rewarming at 37˚C for 5 h (4/37), at 15°C for 1 h followed by rewarming at 37˚C for 5 h (15/37), at 25˚C for 1 h followed by rewarming at 37˚C for 5 h (25/37), and at 37˚C for 6 h (37).After incubation under the conditions as indicated, the numbers of DAPI-positive objects on the coverslips in the microscopic field (0.35 cm 2 ) were counted.The values shown epresent means ± SE of three independent experiments.r Objects and PMA-Stimulated NETsWhen we observed the DAPI-positive objects in hypothermia/rewarming-treated human neutrophils, we noticed that morphological similarities between the objects and DAPI-stained PMA-stimulated NETs, leading us to suspect that the DAPI-positive objects per se might represent NETs (Figure2(a)).To investigate this possibility, we first asked whether the that DAPI-positive objects possessed the ability to bind bacteria.Given NETs are defined as extracellular DNA-proteinaceous structures that exhibit the ability to associate with a wide variety of Gram-positive and Gram-negative pathogens[7], we expected that the DAPI-positive structures might also show similar properties.As shown in Figure2(b), when GFP-expressing E. coli was incubated with the coverslip containing DAPI-positive objects, we found multiple GFP signals present together with the DAPI-signals.Their ability to trap bacteria appeared equivalent to that of PMA-stimulated NETs, because the number and distribution of GFP-signals associated with the DAPI-positive objects were very similar to those associated with PMA-stimulated NETs, suggesting that the objects possessed the ability to trap bacteria.It should be mentioned that the number of bacteria trapped to the DAPI-positive objects was reduced when the coverslips were treated with DNase I (Figure 2(c)).Similar results were obtained when PMA-stimulated NETs were treated with DNase I.These results imply that both structures are equally susceptible to DNase I treatment with respect to bacterial trap.

Figure 2 .
Figure 2. Hypothermia/rewarming-induced DAPI-positive objects exhibited several features similar to PMA-stimulated NETs.(a) Human neutrophils were incubated in a culture dish containing a coverslip at 4˚C for 1 h followed by incubation at 37˚C for 5 h.The coverslip was removed and fixed in PBS containing 4% paraformaldehyde and then stained with DAPI (left).For the control, PMA-stimulated neutrophils, which exhibit canonical NETs, were fixed with 4% paraformaldehyde and subjected to DAPI-staining (right).Bar indicates 50 μm; (b) Human neutrophils were incubated in a culture dish containing a coverslip at 4˚C for 1 h followed by incubation at 37˚C for 5 h.The coverslip was removed and then transferred to culture medium containing E. coli expressing recombinant GFP, followed by incubation for 15 min at 37˚C (left).For the control, PMA-stimulated neutrophils were treated in the same way (right).The arrows indicate GFP-signals that represent E. coli.Bar indicates 50 μm; (c) After hypothermia/rewarming-(left) or PMA-incubation (right), the coverslips were treated with DNase buffer alone (gray bars) or DNase buffer containing 100 U/ml DNase I (black bars) at 37˚C for 1 hr.The numbers of E. coli with GFP signals on the coverslips in the microscopic field (0.35 cm 2 ) were counted.The values shown represent means ± SE of three independent experiments; (d) The hypothermia/rewarming-induced DAPI-positive objects and PMAstimulated NETs were immunostained with (upper panels in left and middle-right columns) or without (upper panels in middle-right and right columns) anti-NE antibodies.DAPI-stained images of each treatment are shown at the bottom.Bar indicates 50 μm; (e) The hypothermia/rewarming-induced DAPI-positive objects and PMA-stimulated NETs were immunostained with (upper panels in left and middle-right columns) or without (upper panels in middle-right and right columns) anti-histone H3 antibodies.DAPI-stained images of each treatment are shown at the bottom.Bar indicates 50 μm.

Figure 3 .Figure 4 .
Figure 3. Hypothermia/rewarming-induced DAPI-positive, NET-like structures exhibited several features distinct from PMA-stimulated NETs.(a) The hypothermia/rewarming-induced DAPI-positive objects and PMA-stimulated NETs were immunostained with (upper panels in left and middle-right columns) or without (upper panels in middle-right and right columns) anti-H3cit antibodies.DAPI-stained images of each treatment are shown at the bottom.Bar indicates 50 μm; (b) Hypothermia/rewarming-induced DAPI-positive, NET-like structures (left column) and PMA-stimulated NETs (right column) were subjected to TUNEL assay (upper panel).DNA was visualized with propidium iodide (PI; lower panel).Bar indicates 50 μm.
and see Figure 4(b)], we tested the effect of this drug.Intriguingly, neither ROS generation nor the formation of DAPI-positive objects was significantly affected by administration of DPI (Figures 4(a) and (b)), indicating that the mechanism of ROS generation in hypothermia/rewarming-treated neutrophils could be pharmacologically distinguished from that in PMA-stimulated cells with respect to the involvement of NADPH oxidase in ROS generation.