Dr. Qian Zhu
Department
of Health Sciences Research, Mayo Clinic, USA
Email: zhu.qian@mayo.edu
Qualifications
2000-2005
Ph.D., Chinese Academy of Sciences, China
1996-2000
B.Sc., SiChuan Normal University, China
Publications (selected)
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Zhu
Q, Yao J, Li F, Chen H, Yuan S. A Novel Approach to Acquire Reaction Knowledge
by Classification of Reaction Data. Acta Chimica Sinica. 2004; 62:112.
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Zhu
Q, Yao J, Li F, Chen H, Yuan S. Comparison of the R-Group Similarity. Acta
Chimica Sinica. 2004; 62:1585.
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Zhu
Q, Yao J, Yuan S, Li F, Chen H, Cai W, Liao Q. Superstructure searching
algorithm for generic reaction retrieval. J Chem Inf Model. 2005 Sep-Oct;
45(5):1214-22.
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Chen
B, Dong X, Jiao D, Wang H, Zhu Q, Ding Y, Wild DJ. Chem2Bio2RDF: a semantic
framework for linking and data mining chemogenomic and systems chemical biology
data. BMC Bioinformatics. 2010; 11:255. Epub 2010 May 17.
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Zhu
Q, Lajiness MS, Ding Y, Wild DJ. WENDI: A tool for finding non-obvious
relationships between compounds and biological properties, genes, diseases and
scholarly publications. J Cheminform. 2010; 2:6. Epub 2010 Aug 20.
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Chen
B, Ding Y, Wang H, Wild DJ, Dong X, Sun Y, Zhu Q, Sankaranarayanan M.
Chem2Bio2RDF: A Linked Open Data Portal for Systems Biology. Web Intelligence
and Intelligent Agent Technology (WI-IAT), 2010 IEEE/WIC/ACM International
Conference on. Sept 2010; 1:232-9.
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Zhu
Q, Challa S, Purohit P, Sun Y, Lajiness MS, Wild DJ, Ding Y. Using Web
Technologies for Integrative Drug Discovery. Web Intelligence and Intelligent
Agent Technology (WI-IAT), 2010 IEEE/WIC/ACM International Conference on. Sept
2010; 1:188-91.
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Zhu
Q, Sun Y, Challa S, Ding Y, Lajiness MS, Wild DJ. Semantic inference using
chemogenomics data for drug discovery. BMC Bioinformatics. 2011; 12:256. Epub
2011 Jun 23.
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Pathak
J, Weiss LC, Durski MJ, Zhu Q, Freimuth RR, Chute CG. Integrating va's ndf-rt
drug terminology with pharmgkb: preliminary results. Pac Symp Biocomput. 2012;
400-9.
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Zhu
Q, Jiang G, Chute CG. Profiling Structured Product Labeling Using NDF-RT and
RxNorm. Accepted by ICBO 2012.
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Zhu
Q, Freimuth RR, Lian Z, Bauer HS, Durski MJ, Tao C, Pathak J, Chute
CG. Harmonization and semantic annotation of data dictionaries from the
Pharmacogenomics Research Network: a case study. Submitted to Journal of
Biomedical Informatics.
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Zhu
Q,Freimuth RR, Pathak J, Durski MJ, Chute CG. Phenotype annotation for PharmGKB
drug-disease relations with NDF-RT and SPL. Submitted to Journal of Biomedical
Informatics.
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Zhu
Q, Ding Y, Chute CG, Tao C. Time-related question answering for the case
studies from the pharmacogenomics research network. Submitted to Journal of
Medical Systems.
Refereed Conference
Publications
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Zhu
Q, Pierce ME, Fox GC, Lajiness M, Wild DJ. Integrative Data Mining for Drug
Discovery Using the Semantic Web (Abstract). Microsoft eScience Workshop 2009,
Pittsburgh, Pennsylvania.
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Challa
S, Wild DJ, Ding Y, Zhu Q. Semantic Rules on Drug Discovery Data (Abstract).
Fourth Asian Conference, ASWC 2009 Shanghai, People's Republic of China.
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Chen
B, Ding Y, Dong X, Jiao D, Wang H, Zhu Q. Chem2Bio2RDF: Semantic Systems
Chemical Biology (Abstract). American Chemical Society 239th National Meeting.
San Francisco, California.
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Zhu
Q, Lajiness M, Wild DJ. Using Aggregative Web Services for Drug Discovery
(Abstract). American Chemical Society 239th National Meeting. San Francisco,
California.
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Zhu
Q, Lajiness M, Wild DJ.Mining and Visualizing Chemical Compound-Specific
Chemical-Gene/Disease/Pathway/Literature Relationships (Abstract). American
Chemical Society 240th National Meeting Boston, Massachusetts.
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Pandit
Y, Zhu Q, Choi J, Bae SH, Qiu J, Wild DJ.Exploring Activity Cliffs using Large
Scale Semantic Analysis of PubChem (Abstract). American Chemical Society 240th
National Meeting. Boston, Massachusetts.
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Freimuth
RR, Pathak J, Zhu Q, Sharma DK, Bauer HS, Lian ZH, Durski MJ, Chute CG. PGRN
Ontology Network Resource (Abstract). AMIA 2011 Annual Symposium. 2011 Oct
24:1771.
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Zhu
Q, Freimuth RR, Durski MJ, Pathak J, Chute CG. Standardization of Data
Dictionaries: A Case Study from the Pharmacogenomics Research Network
(Abstract). AMIA Summit on Clinical Research Informatics (CRI). San Francisco,
CA. 2012 Mar.
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Zhu
Q, Freimuth RR, Pathak J, Durski MJ, Lian Z, Bauer HS, Sharma DK, Chute CG.
Development of infrastructure, data standards, and best practices for the
curation of pharmacogenomics data (Abstract). The Fifth International
Biocuration Conference. Georgetown University, Washington, DC. 2012 Apr.
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Zhu
Q, Freimuth R, Lian Z, Bauer S, Durski M, Pathak J, Chute C. Pharmacogenomics
Data Standardization using Clinical Element Models (CEMs) (Abstract) Proceedings
of SHARP Area 4 F2F Meeting. June 11-12, 2012.
Book Chapters
Challa
S, Wild D, Ding Y, Zhu Q. Semantic Rules on Drug Discovery Data In: The
Semantic Web Vol. 5926. 2009. p. 362-4. (Lecture Notes in Computer Science).
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