Phylogenic Study of Twelve Species of Phyllanthus Originated from India through Molecular Markers for Conservation
Gyana Ranjan Rout, Subhashree Aparajita
.
DOI: 10.4236/ajps.2010.11005   PDF    HTML     6,856 Downloads   13,815 Views   Citations

Abstract

The objective of the study was to characterize the germplasm for identification and phylogeny study for conservation. Identification and characterization of germplasm is an important link between the conservation and utilization of plant genetic resources. The present investigation was undertaken to draw the phylogenetic relationship between twelve species from India belonging to genus Phyllanthus with the help of molecular markers. In total, 259 marker loci were assessed, out of which 249 were polymorphic revealing 96.13% polymorphism. Nei’s similarity index varies from 0.23 to 0.76 for RAPD and 0.26 to 0.81 for ISSR marker systems. Cluster analysis by unweighted pair group method (UPGMA) of Dice coefficient of similarity generated dendogram with more or less similar topology for both the analysis that gave a better reflection of diversity and affinities between the species. The phylogenetic tree obtained from both RAPD and ISSR marker has divided the 12 species in two groups: group I consisting of only one species Phyllanthus angustifolius and the group II with the rest 11 species. This molecular result is comparable to notable morphological characteristics. The present study revealed the distant variation within the species of Phyllanthus. This investigation will help for identification and conservation of Phyllanthus species.

Share and Cite:

G. Rout and S. Aparajita, "Phylogenic Study of Twelve Species of Phyllanthus Originated from India through Molecular Markers for Conservation," American Journal of Plant Sciences, Vol. 1 No. 1, 2010, pp. 32-37. doi: 10.4236/ajps.2010.11005.

Conflicts of Interest

The authors declare no conflicts of interest.

References

[1] W. Dnyaneshwar, C. Preeti, J. Kalpana and P. Bhushan, “Development and Application of RAPD-SCAR Marker for Identification of Phyllanthus Emblica Linn,” Biological & Pharmaceutical Bulletin, Vol. 29, No. 11, 2006, pp. 2313-2316.
[2] B. S. Geetha, K. K. Sabu and S. Seeni, “Genetic Variation in South India Populations of Phyllanthus Amarus Schum & Thonn. (Euphorbiaceae) Assessed Using Isozymes,” Proceedings of the Fifteenth Kerala Science Congress, 29-31 January 2003, pp. 196-201.
[3] K. P. Kirtikar and B. D. Basu, “Indian Medicinal Plants,” Vol.III, 2nd edition, Bishen Singh Mahendrapal Singh, New Delhi, 1993.
[4] K. M. Nadkarni, “Indian Materia Medica, 1:1947,” Popular Prakashan Pvt. Ltd, Bombay, 1976.
[5] J. G. K. Williams, A. R. Kubelik, K. J. Livak, J. A. Rafalski and S. V. Tingey, “DNA Polymorphisms Amplified by Arbitrary Primers are Useful as Genetic Markers,” Nucleic Acids Research, Vol. 18, No. 22, 1990, pp. 6531 -6535.
[6] A. H. Paterson, S. D. Tanksley and M. E. Sorreis, “DNA Markers in Plant Improvement,” Advances in Agronomy, Vol. 46, No. 1, 1991, pp. 39-90.
[7] S. Barik, S. K. Senapati, S. Aparajita, A. Mohapatra and G. R. Rout, “Identification and Genetic Variation among Hibiscus Species (Malvaceae) Using RAPD Markers,” Z Naturforsch C, Vol. 61, No. 1-2, 2006, pp. 123-128.
[8] A. Mohapatra and G. R. Rout, “Identification and Genetic Variation among Rose Cultivars,” Z Naturforsch C, Vol. 60, No. 7/8, 2005, pp. 611-617.
[9] M. Pharmawati, G. Yen and I. J. McFarlane, “Application of RAPD and ISSR Markers to Analyse Molecular Relationships in Grevillea (Proteaceae),” Australian Systematic Botany, Vol. 17, No. 1, 2004, pp. 49-61.
[10] B. Koller, A. Lehmann, J. M. Mcdermott and C. Gessler, “Identification of Apple Cultivars Using RAPD Markers,” TAG Theoretical and Applied Genetics, Vol. 85, No. 6-7, 1993, pp. 901-904.
[11] K. Wolff and J. Peters-Van Run, “Rapid Detection of Genetic Variability in Chrysanthemum (Dendranthema Gr- Andiflora Tzvelev.) Using Random Primers,” Heredity, Vol. 71, No. 4, 1993, pp. 335-341.
[12] P. H. Lashermes, J. Cros, P. H. Marmey and A. Charrier, “Use of Random Amplified Polymorphic DNA Markers to Analyze Genetic Variability and Relationships of Coffea Species,” Genetic Resource and Crop Evolution, Vol. 40, No. 2, 1993, pp. 91-99.
[13] S. E. Wilkie, P. G. Isaac and R. J. Slater, “Random Amplified Polymorphic DNA (RAPD) Markers for Genetic Analysis in Allium,” TAG Theoretical and Applied Genetics, Vol. 86, No. 4, 1993, pp. 497-504.
[14] J. Wilde, R. Waugh and W. Powell, “Genetic Finger Printing of Theobroma Clones Using Randomly Amplified Polymorphic DNA Markers,” TAG Theoretical and Applied Genetics, Vol. 83, No. 6-7, 1992, pp. 871-877.
[15] J. J. Doyle and J. L. Doyle, “Isolation of Plant DNA from Fresh Tissue,” Focus, Vol. 12, No. 1, 1990, pp. 13-15.
[16] M. Nei and W. H. Li, “Mathematical Modes for Studying Genetic Variation in Terms of Restriction Endonucleases,” Proceedings of the National Academy of Sciences, Vol. 76, No. 10, 1979, pp. 5269-5273.
[17] A. Pavlicek, S. Hrda and J. Flegr, “Free Tree-Freeware Program for Construction of Phylogenetic Trees on the Basis of Distance Data and Boot Strapping/Jackknife Analysis of the Tree Robustness. Application in the RAPD Analysis of the Genus Frenkelia,” Folia Biologica, Vol. 45, No. 3, 1999, pp. 97-99.
[18] D. Bai, J. Brandle and R. Reeleder, “Genetic Diversity in North America Ginseng (Panax Quinquefolius L.) Grown in Ontario Detected by RAPD Analysis,” Genome, Vol. 40, No. 1, 1997, pp. 111-115.
[19] G. R. Rout, P. Das, S. Goel and S. N. Raina, “Determination of Genetic Stability of Micropropagated Plants of Ginger Using Random Amplified Polymorphic DNA (RAPD) Markers,” Botanical Bulletin Academia Sinica, Vol. 39, No. 1, 1998, pp. 23-27.
[20] M. D. Pal and S. S. Raychaudhuri, “Estimation of Genetic Variability in Plantago Ovata Cultivars,” Biologia Plantarum, Vol. 47, No. 3, 2003, pp. 459-462.
[21] G. R. Rout, “Identification of Tinospora Cordifolia (Willd) Miers ex Hook F & Thomas Using RAPD Markers,” Z Naturforschung C, Vol. 61, No. 1-2, 2006, pp. 118-122.
[22] G. Rajaseger, H. T. W. Tan, I. M. Turner and P. P. Kumar, “Analysis of Genetic Diversity among Ixora Cultivars (Rubiaceae) Using Random Amplified Polymorphic DNA,” Annals of Botany, Vol. 80, No. 3, 1997, pp. 355-361.

Copyright © 2024 by authors and Scientific Research Publishing Inc.

Creative Commons License

This work and the related PDF file are licensed under a Creative Commons Attribution 4.0 International License.