[1]
|
Josefsson, L. G. (1999) Evidence for kinship between diverse G-protein coupled receptors, Gene. 239, 333-40.
doi:/10.1016/S0378-1119(99)00392-3
|
[2]
|
Zhu, J., Choi, W. S., McCoy, J. G., Negri, A., Naini, S., Li, J., Shen, M., Huang, W., Bougie, D., Rasmussen, M., Aster, R., Thomas, C. J., Filizola, M., Springer, T. A. & Coller, B. S. (2012) Structure-guided design of a high-affinity platelet integrin alphaIIbbeta3 receptor antagonist that disrupts Mg(2)(+) binding to the MIDAS, Science translational medicine. 4, 125ra32.
|
[3]
|
Zhu, J. M., Zhu, Y. & Liu, R. (2008) Health insurance of ru-ral/township schoolchildren in Pinggu, Beijing: cov-erage rate, determinants, disparities, and sustainability, International journal for equity in health. 7, 23.
doi:/10.1186/1475-9276-7-23
|
[4]
|
Kristiansen, K. (2004) Molecular mechanisms of ligand binding, signaling, and regulation within the superfamily of G-protein-coupled receptors: molecular modeling and mutagenesis approaches to receptor structure and function, Pharmacology & therapeutics. 103, 21-80.
doi:/10.1016/j.pharmthera.2004.05.002
|
[5]
|
Vassilatis, D. K., Hohmann, J. G., Zeng, H., Li, F., Ranchalis, J. E., Mortrud, M. T., Brown, A., Rodriguez, S. S., Weller, J. R., Wright, A. C., Bergmann, J. E. & Gaitanaris, G. A. (2003) The G protein-coupled receptor repertoires of human and mouse, Proceedings of the National Academy of Sciences of the United States of America. 100, 4903-8. doi:/10.1073/pnas.0230374100
|
[6]
|
Fredriksson, R., La-gerstrom, M. C., Lundin, L. G. & Schioth, H. B. (2003) The G-protein-coupled receptors in the human genome form five main families. Phylogenetic analysis, paralogon groups, and fingerprints, Molecular phar-macology. 63, 1256-72.
doi:/10.1124/mol.63.6.1256
|
[7]
|
Cardoso, J. C., Pinto, V. C., Vieira, F. A., Clark, M. S. & Power, D. M. (2006) Evolution of secretin family GPCR members in the metazoa, BMC evolutionary biology. 6, 108. doi:/10.1186/1471-2148-6-108
|
[8]
|
Fridmanis, D., Fre-driksson, R., Kapa, I., Schioth, H. B. & Klovins, J. (2007) Formation of new genes explains lower intron density in mammalian Rhodopsin G protein-coupled receptors, Molecular phylogenetics and evolution. 43, 864-80. doi:/10.1186/1471-2148-6-108
|
[9]
|
Cao, J., Huang, S., Qian, J., Huang, J., Jin, L., Su, Z., Yang, J. & Liu, J. (2009) Evolution of the class C GPCR Venus flytrap modules involved positive selected functional divergence, BMC evolutionary biology. 9, 67.
doi:/10.1186/1471-2148-9-67
|
[10]
|
Kurtenbach, S., Mayer, C., Pelz, T., Hatt, H., Leese, F. & Neuhaus, E. M. (2011) Molecular evolution of a chordate specific family of G protein-coupled receptors, BMC evolu-tionary biology. 11, 234.
doi:/10.1186/1471-2148-11-234
|
[11]
|
Nordstrom, K. J., Sallman Almen, M., Edstam, M. M., Fredriksson, R. & Schioth, H. B. (2011) Independent HHsearch, Needleman--Wunsch-based, and motif analyses reveal the overall hierarchy for most of the G protein-coupled receptor families, Molecular biology and evolution. 28, 2471-80. doi:/10.1093/molbev/msr061
|
[12]
|
Krishnan, A., Almen, M. S., Fredriksson, R. & Schioth, H. B. (2012) The origin of GPCRs: identification of mammalian like Rhodopsin, Adhesion, Glutamate and Frizzled GPCRs in fungi, PloS one. 7, e29817.
doi:/10.1371/journal.pone.0029817
|
[13]
|
Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic acids research. 25, 3389-402. doi:/10.1093/nar/25.17.3389
|
[14]
|
Kent, W. J. (2002) BLAT--the BLAST-like alignment tool, Genome research. 12, 656-64. doi:/10.1101/gr.229202
|
[15]
|
Liu, Q., Zhu, Y. S., Wang, B. H. & Li, Y. X. (2003) A HMM-based method to predict the transmembrane regions of beta-barrel membrane proteins, Computational biology and chemistry. 27, 69-76.
doi:/10.1016/S0097-8485(02)00051-7
|
[16]
|
Becker, E., Cotillard, A., Meyer, V., Madaoui, H. & Guerois, R. (2007) HMM-Kalign: a tool for generating sub-optimal HMM alignments, Bioinformatics. 23, 3095-7.
doi:/10.1093/bioinformatics/btm492
|
[17]
|
Singh, N. K., Goodman, A., Walter, P., Helms, V. & Hayat, S. (2011) TMBHMM: a frequency profile based HMM for predicting the topology of transmembrane beta barrel proteins and the exposure status of transmem-brane residues, Biochimica et biophysica acta. 1814, 664-70.
doi:/10.1016/j.bbapap.2011.03.004
|
[18]
|
Chou, K. C. & Elrod, D. W. (2002) Bioinformatical analysis of G-protein-coupled receptors, Journal of proteome research. 1, 429-33.
doi:/10.1021/pr025527k
|
[19]
|
Elrod, D. W. & Chou, K. C. (2002) A study on the correlation of G-protein-coupled receptor types with amino acid composition, Protein engineering. 15, 713-5.
doi:/10.1093/protein/15.9.713
|
[20]
|
Chou, K. C. (2005) Prediction of G-protein-coupled receptor classes, Journal of proteome research. 4, 1413-8. doi:/10.1021/pr050087t
|
[21]
|
Karchin, R., Karplus, K. & Haussler, D. (2002) Classifying G-protein coupled receptors with support vector machines, Bioinformatics. 18, 147-59.
doi:/10.1093/bioinformatics/18.1.147
|
[22]
|
Bhasin, M. & Raghava, G. P. (2005) GPCRsclass: a web tool for the classification of amine type of G-protein-coupled re-ceptors, Nucleic acids research. 33, W143-7. doi:/10.1093/nar/gki351
|
[23]
|
Huang, Y., Cai, J., Ji, L. & Li, Y. (2004) Classifying G-protein coupled receptors with bagging classification tree, Computational biol-ogy and chemistry. 28, 275-80. doi:/10.1016/j.compbiolchem.2004.08.001
|
[24]
|
Qiu, J. D., Huang, J. H., Liang, R. P. & Lu, X. Q. (2009) Prediction of G-protein-coupled receptor classes based on the concept of Chou's pseudo amino acid composition: an approach from discrete wavelet transform, Analytical biochemistry. 390, 68-73.
doi:/10.1016/j.ab.2009.04.009
|
[25]
|
Zhu, J., Negri, A., Provasi, D., Filizola, M., Coller, B. S. & Springer, T. A. (2010) Closed headpiece of integrin alphaIIbbeta3 and its complex with an alphaIIbbeta3-specific anta-gonist that does not induce opening, Blood. 116, 5050-9.
doi:/10.1182/blood-2010-04-281154
|
[26]
|
Davies, M. N., Secker, A., Freitas, A. A., Mendao, M., Timmis, J. & Flower, D. R. (2007) On the hierarchical classification of G protein-coupled receptors, Bioinformatics. 23, 3113-8.
doi:/10.1093/bioinformatics/btm506
|
[27]
|
Wang, R., Zhu, J., Dong, X., Shi, M., Lu, C. & Springer, T. A. (2012) GARP regulates the bioavailability and activation of TGFbeta, Molecular biology of the cell. 23, 1129-39. doi:/10.1091/mbc.E11-12-1018
|
[28]
|
Kolakowski, L. F., Jr. (1994) GCRDb: a G-protein-coupled receptor database, Receptors & channels. 2, 1-7.
|
[29]
|
Fredriksson, R. & Schioth, H. B. (2005) The repertoire of G-protein-coupled receptors in fully sequenced ge-nomes, Molecular pharmacology. 67, 1414-25.
doi:/10.1124/mol.104.009001
|
[30]
|
Schioth, H. B. & Fre-driksson, R. (2005) The GRAFS classification system of G-protein coupled receptors in comparative pers-pective, General and comparative endocrinology. 142, 94-101.
doi:/10.1016/j.ygcen.2004.12.018
|
[31]
|
Shi, M., Zhu, J., Wang, R., Chen, X., Mi, L., Walz, T. & Springer, T. A. (2011) Latent TGF-beta structure and activation, Nature. 474, 343-9.
doi:/10.1038/nature10152
|
[32]
|
Zhu, J., Spencer, T. J., Liu-Chen, L. Y., Biederman, J. & Bhide, P. G. (2011) Methylphenidate and mu opioid receptor interactions: a pharmacological target for prevention of stimulant abuse, Neuropharmacology. 61, 283-92.
doi:/10.1016/j.neuropharm.2011.04.015
|
[33]
|
Lu, C., Mi, L. Z., Grey, M. J., Zhu, J., Graef, E., Yokoyama, S. & Springer, T. A. (2010) Structural evidence for loose linkage between ligand binding and kinase activation in the epidermal growth factor receptor, Molecular and cellular biology. 30, 5432-43.
doi:/10.1128/MCB.00742-10
|
[34]
|
Zhu, J., Brawarsky, P., Lipsitz, S., Huskamp, H. & Haas, J. S. (2010) Massa-chusetts health reform and disparities in coverage, access and health status, Journal of general internal medicine. 25, 1356-62.
doi:/10.1007/s11606-010-1482-y
|
[35]
|
Pin, J. P., Galvez, T. & Prezeau, L. (2003) Evolution, structure, and activation mechanism of family 3/C G-protein-coupled receptors, Pharmacology & therapeutics. 98, 325-54.
doi:/10.1016/S0163-7258(03)00038-X
|
[36]
|
Secker, A., Davies, M. N., Freitas, A. A., Clark, E. B., Timmis, J. & Flower, D. R. (2010) Hierarchical classification of G-protein-coupled receptors with data-driven selection of attributes and classifiers, International journal of data mining and bioinformatics. 4, 191-210. doi:/10.1504/IJDMB.2010.032150
|
[37]
|
Schoneberg, T., Hofreiter, M., Schulz, A. & Rompler, H. (2007) Learning from the past: evolution of GPCR functions, Trends in pharmacological sciences. 28, 117-21. doi:/10.1016/j.tips.2007.01.001
|
[38]
|
Ault, A. D. & Broach, J. R. (2006) Creation of GPCR-based chemical sensors by directed evolution in yeast, Protein engineering, design & selection : PEDS. 19, 1-8.
|
[39]
|
Biederman, J., Petty, C. R., Spencer, T. J., Woodworth, K. Y., Bhide, P., Zhu, J. & Faraone, S. V. (2012) Examining the nature of the comorbidity between pediatric attention deficit/hyperactivity disorder and post-traumatic stress disorder, Acta psychiatrica Scandinavica.
doi:/10.1111/acps.12011
|
[40]
|
Strotmann, R., Schrock, K., Boselt, I., Staubert, C., Russ, A. & Schoneberg, T. (2011) Evolution of GPCR: change and continuity, Molecular and cellular endocrinology. 331, 170-8. doi:/10.1016/j.mce.2010.07.012
|
[41]
|
Fredriksson, R., Gloriam, D. E., Hoglund, P. J., Lagerstrom, M. C. & Schioth, H. B. (2003) There exist at least 30 human G-protein-coupled receptors with long Ser/Thr-rich N-termini, Biochemical and biophysical research communications. 301, 725-34.
doi:/10.1016/S0006-291X(03)00026-3
|
[42]
|
Graul, R. C. & Sadee, W. (2001) Evolutionary relationships among G protein-coupled receptors using a clustered database approach, AAPS pharmSci. 3, E12.
doi:/10.1208/ps030212
|
[43]
|
Gloriam, D. E., Bjarnadottir, T. K., Yan, Y. L., Postlethwait, J. H., Schioth, H. B. & Fredriksson, R. (2005) The repertoire of trace amine G-protein-coupled receptors: large expansion in ze-brafish, Molecular phylogenetics and evolution. 35, 470-82. doi:/10.1016/j.ympev.2004.12.003
|
[44]
|
Churcher, A. M. & Taylor, J. S. (2011) The antiquity of chordate odorant receptors is revealed by the discovery of or-thologs in the cnidarian Nematostella vectensis, Ge-nome biology and evolution. 3, 36-43.
doi:/10.1093/gbe/evq079
|
[45]
|
Bengtson, S., Belivanova, V., Rasmussen, B. & Whitehouse, M. (2009) The controversial "Cambrian" fossils of the Vindhyan are real but more than a billion years older, Proceedings of the National Academy of Sciences of the United States of America. 106, 7729-34.
doi:/10.1073/pnas.0812460106
|
[46]
|
Brundrett, M. C. (2002) Coevolution of roots and mycorrhizas of land plants, New Phytologist. 154: 275–304. doi:/10.1046/j.1469-8137.2002.00397.x
|
[47]
|
Trumpp-Kallmeyer, S., Hoflack, J., Bruinvels, A. & Hibert, M. (1992) Modeling of G-protein-coupled receptors: ap-plication to dopamine, adrenaline, serotonin, acetyl-choline, and mammalian opsin receptors, Journal of medicinal chemistry. 35, 3448-62.
doi:/10.1021/jm00097a002
|
[48]
|
Zhang, D. & Weinstein, H. (1994) Polarity conserved positions in transmem-brane domains of G-protein coupled receptors and bacteriorhodopsin, FEBS letters. 337, 207-12. doi:/10.1016/0014-5793(94)80274-2
|
[49]
|
Grigorieff, N., Ceska, T. A., Downing, K. H., Baldwin, J. M. & Henderson, R. (1996) Electron-crystallographic re-finement of the structure of bacteriorhodopsin, Journal of molecular biology. 259, 393-421.
doi:/10.1006/jmbi.1996.0328
|
[50]
|
Palczewski, K., Ku-masaka, T., Hori, T., Behnke, C. A., Motoshima, H., Fox, B. A., Le Trong, I., Teller, D. C., Okada, T., Stenkamp, R. E., Yamamoto, M. & Miyano, M. (2000) Crystal structure of rhodopsin: A G protein-coupled receptor, Science. 289, 739-45.
doi:/10.1126/science.289.5480.739
|
[51]
|
Taylor, E. W. & Agarwal, A. (1993) Sequence homology between bacteriorhodopsin and G-protein coupled receptors: exon shuffling or evolution by duplication?, FEBS letters. 325, 161-6.
doi:/10.1016/0014-5793(93)81065-8
|
[52]
|
Oesterhelt, D. (1998) The structure and mechanism of the family of retinal proteins from halophilic archaea, Current opi-nion in structural biology. 8, 489-500.
doi:/10.1016/S0959-440X(98)80128-0
|
[53]
|
Fuhrman, J. A., Schwalbach, M. S. & Stingl, U. (2008) Proteorhodopsins: an array of physiological roles?, Nature reviews Microbiology. 6, 488-94.
|
[54]
|
Felder, C. B., Graul, R. C., Lee, A. Y., Merkle, H. P. & Sadee, W. (1999) The Venus flytrap of periplasmic binding proteins: an ancient protein module present in multiple drug receptors, AAPS pharmSci. 1, E2. doi:/10.1208/ps010202
|
[55]
|
Zhu, J., Gaiha, G. D., John, S. P., Pertel, T., Chin, C. R., Gao, G., Qu, H., Walker, B. D., Elledge, S. J. & Brass, A. L. (2012) Reactiva-tion of Latent HIV-1 by Inhibition of BRD4, Cell reports. 2, 807-16.
|
[56]
|
O'Hara, P. J., Sheppard, P. O., Thogersen, H., Venezia, D., Haldeman, B. A., McGrane, V., Houamed, K. M., Thomsen, C., Gilbert, T. L. & Mulvihill, E. R. (1993) The ligand-binding domain in metabotropic glutamate receptors is related to bacterial periplasmic binding proteins, Neuron. 11, 41-52.
doi:/10.1016/0896-6273(93)90269-W
|