[1]
|
Barua, A. and Yoshimura, Y. (1997) Rural Poultry Keeping in Bangladesh. World’s Poultry Science Journal, 53, 392-394. https://doi.org/10.1079/WPS19970031
|
[2]
|
Gueye, E.H.F. (1998) Village Egg and Fowl Meat Production in Africa. World’s Poultry Science Journal, 54, 82-86. https://doi.org/10.1079/WPS19980007
|
[3]
|
Khan, A.G. (2008) Indigenous Breeds, Crossbreds and Synthetic Hybrids with Modified Genetic and Economic Profiles for Rural Family and Small-Scale Poultry Farming in India. World’s Poultry Science Journal, 64, 405-415. https://doi.org/10.1017/S0043933908000135
|
[4]
|
Vali, N. (2008) Indigenous Chicken Production in Iran: A Review. Pakistan Journal of Biological Sciences, 11, 2525-2531. https://doi.org/10.3923/pjbs.2008.2525.2531
|
[5]
|
Bett, H.K., Peters, K.J. and Bokelman, W. (2011) Hedonic Price Analysis to Guide in Breeding and Production of Indigenous Chicken in Kenya. Livestock Research for Rural Development, 23. http://www.lrrd.org/lrrd23/6/bett23142.htm
|
[6]
|
Magothe, T., Mokeno, T.O., Muhuyi, W.B. and Kahi, A.K. (2012) Indigenous chicken Production in Kenya: I. Current Status. World’s Poultry Science Journal, 68, 119-132. https://doi.org/10.1017/S0043933912000128
|
[7]
|
Magothe, T., Mokeno, T.O., Muhuyi, W.B. and Kahi, A.K. (2012) Indigenous Chicken Production in Kenya: II. Prospects for Research and Development. World’s Poultry Science Journal, 68, 133-144. https://doi.org/10.1017/S004393391200013X
|
[8]
|
Mpenda, F.N., Schilling, M.A., Campbell, Z., Mngumi, E.B. and Buza, J. (2019) The Genetic Diversity of Local African Chickens: A Potential for Selection of Chickens Resistant to Viral Infections. Journal of Applied Poultry Research, 28, 1-12. https://doi.org/10.3382/japr/pfy063
|
[9]
|
Habimana, R., Okeno, T.O., Ngeno, K., Mboumba, S., Assam, P., Gbotto, A.A. and et al. (2020) Genetic Diversity and Population Structure of Indigenous Chicken in Rwanda Using Microsatellite Markers. PLoS ONE, 15, e0238966. https://doi.org/10.1371/journal.pone.0225084
|
[10]
|
Hanssen, S.A. and Kumar, P.M. (2016) Importance of Indigenous Breeds of Chicken for Rural Economy and Their Improvements for Higher Production Performance. Scientifica, 2016, Article ID: 2604685. https://doi.org/10.1155/2016/2604685
|
[11]
|
Rudresh, B.H., Murthy, H.N.N., Jayashankar, M.R., Nagaraj, C.S., Kotresh, A.M. and Byregowda, S.M. (2015) Microsatellite Based Genetic Diversity Study in Indigenous Chicken Ecotypes of Karnataka. Veterinary World, 8, 970-976. https://doi.org/10.14202/vetworld.2015.970-976
|
[12]
|
Mahoro, J., Muasya, T.K., Mbuza, F., Habimana, R. and Kahi, A.K. (2017) Characterization of Indigenous Chicken Production Systems in Rwanda. Poultry Science, 96, 4245-4252. https://doi.org/10.3382/ps/pex240
|
[13]
|
Abebe, A.S., Mikko, S. and Johansson, A.M. (2015) Genetic Diversity of Five Local Swedish Chicken Breeds Detected by Microsatellite Markers. PLoS ONE, 10, e0120580. https://doi.org/10.1371/journal.pone.0120580
|
[14]
|
Msoffe, P.L.M., Mtambo, M.M.A., Minga, U.M., Yongolo, M.G.S., Gwakisa, P.S. and Olsen, J.E. (2001) Identification and Characterization of the Free Ranging Local Chicken Ecotypes in Tanzania. Paper Presented at Proceedings of SUS-MU ENRECA Workshop on Farm Animal Genetic Resources in Tanzania, Morogoro, November 2001.
|
[15]
|
Tadelle, D., Kijora, C. and Peters, K.J. (2003) Indigenous Chicken Ecotypes in Ethiopia: Growth and Feed Utilization Potentials. International Journal of Poultry Science, 2, 144-152. https://doi.org/10.3923/ijps.2003.144.152
|
[16]
|
Muchadeyi, F.C., Eding, H., Wollny, C.B., Groeneveld, E., Makuza, S.M., Shamseldin, R., Simianer, H. and Weigend, S. (2007) Absence of Population Substructuring in Zimbabwe Chicken Ecotypes Inferred Using Microsatellite Analysis. Animal Genetics, 38, 332-339. https://doi.org/10.1111/j.1365-2052.2007.01606.x
|
[17]
|
Wimmers, K., Ponsuksili, S., Hardge, T., Valle-Zarate, A., Mathur, P.K. and Horst, P. (2000) Genetic Distinctness of African, Asian, and South American Chickens. Animal Genetics, 31, 159-165. https://doi.org/10.1046/j.1365-2052.2000.00605.x
|
[18]
|
Groen, A.F., Crooijmans, R.P.M.A., VanKampen, A.J.A., Van-derbeek, S., Vander Poel, J.J. and Groenenm, M.A.M. (1996) Microsatellite Polymorphism in Commercial Broiler and Layer Lines. Poultry Science, 75, 904-909.
|
[19]
|
Shahbazi, S., Mirhosseini, S. and Romanov, M. (2007) Genetic Diversity in Five Iranian Native Chicken Populations Estimated by Microsatellite Markers. Biochemical Genetics, 45, 63-75. https://doi.org/10.1007/s10528-006-9058-6
|
[20]
|
Seo, D.W., Hoque, M.R., Choi, N.R., Sultana, H., Park, H.B., Heo, K.N., Kang, B.S., Lim, H.T., Lee, S.H., Jo, C. and Lee, J.H. (2013) Discrimination of Korean Native Chicken Lines Using Fifteen Selected Microsatellite Markers. Asian-Australas Journal of Animal Sciences, 26, 316-322. https://doi.org/10.5713/ajas.2012.12469
|
[21]
|
Sabry, A., Ramadan, S., Hassan, M.M., Mohamed, A.A., Mohammedein, A. and Inoue-Murayama, A. (2021) Assessment of Genetic Diversity among Egyptian and Saudi Chicken Ecotypes and Local Egyptian Chicken Breeds Using Microsatellite markers. Journal of Environmental Biology, 42, 33-39. https://doi.org/10.22438/jeb/42/1/MRN-1572
|
[22]
|
Groenen, M., Cheng, H.H., Bumstead, N., Benkel, B.F., Briles, B.F., Burke, T., Burt, D.W., Crittenden, L.B., Dodgson, J., Hillel, J., Lamont, S., de Leon, A.P, Soller, M., Takahash, H. and Vigna, A. (2000) A Consensus Linkage Map of the Chicken Genome. Genome Research, 10, 173-174.
|
[23]
|
Hillel, J., Groenen, M.A., Tixier-Boichard, M., Korol, A.B., David, L., Kirzhner, V.M., Burke, T., Barre-Dirie, A., Crooijmans, R.P., Elo, K., Feldman, M.W., Freidlin, P.J., Maki-Tanila, A., Oortwijn, M., Thomson, P., Vignal, A., Wimmers, K. and Weigend, S. (2003) Biodiversity of 52 Chicken Populations Assessed by Microsatellite Typing of DNA Pools. Genetics Selection and Evolution, 35, Article No. 533. https://doi.org/10.1186/1297-9686-35-6-533
|
[24]
|
Nones, K., Ledur, M.C., Ruy, D.C., Baron, E.E., Moura, A.S.A.M.T. and Coutinho, L.L. (2005) Genetic Linkage Map of Chicken Chromosome 1 From A Brazilian Resource Population. Scientia Agriccola, 62, 12-17. https://doi.org/10.1590/S0103-90162005000100003
|
[25]
|
Osaman, S.A.M., Yonezawa, T. and Nishibori, M. (2016) Origin and Genetic Diversity of Egyptian Native Chicken Based on Complete Sequence of Mitochondrial DNA D-Loop Region. Poultry Science, 95, 1248-1256. https://doi.org/10.3382/ps/pew029
|
[26]
|
FAO (Food and Agriculture Organization of the United Nations) (2011) Molecular Genetic Characterization of Animal Genetic Resources. Animal Production and Health Guidelines, No. 9, Food and Agriculture Organization of the United Nations, Rome.
|
[27]
|
R Core Team (2021) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna. https://www.R-project.org/.
|
[28]
|
Jombart, T. (2008) Adegenet A R Package for the Multivariate Analysis of Genetic Markers. Bioinformatics, 24, 1403-1405. https://doi.org/10.1093/bioinformatics/btn129
|
[29]
|
Nei, M. (1987) Molecular Evolutionary Genetics. Columbia University Press, New York. https://doi.org/10.7312/nei-92038
|
[30]
|
Weir, B.S. and Cockerham, C.C. (1984) Estimating F-Statistics for the Analysis of Population Structure. Evolution, 38, 1358-1370. https://doi.org/10.1111/j.1558-5646.1984.tb05657.x
|
[31]
|
Wright, S. (1949) The Genetical Structure of Populations. Annals of Eugenics, 15, 323-354. https://doi.org/10.1111/j.1469-1809.1949.tb02451.x
|
[32]
|
Paradis, E. (2010) Pegas: An R Package for Population Genetics with an Integrated-Modular Approach. Bioinformatics, 26, 419-420. https://doi.org/10.1093/bioinformatics/btp696
|
[33]
|
Goudet, J. and Jombart, T. (2020) Hierfstat: Estimation and Tests of Hierarchical F-Statistics. R Package Version 0.5-7. https://CRAN.R-project.org/package=hierfstat
|
[34]
|
Paradis, E. and Schliep, K. (2019) Ape 5.0: An Environment for Modern Phylogenetics and Evolutionary Analyses in R. Bioinformatics, 35, 526-528. https://doi.org/10.1093/bioinformatics/bty633
|
[35]
|
Van-Marle-Koster, E. and Nel, L.H. (2000) Genetic Characterization of Native Southern African Chicken Populations: Evaluation and Selection of Polymorphic Microsatellite Markers. South African Journal of Animal Science, 30, 1-6. https://doi.org/10.4314/sajas.v30i1.3866
|
[36]
|
Ramadan, S., Kayang, B.B., Inoue, E., Nirasawa, K., Hayakawa, H., Ito, S. and Inoue-Murayama, M. (2012) Evaluation of Genetic Diversity and Conservation Priorities for Egyptian Chickens. Open Journal of Animal Sciences, 2, 183-190. https://doi.org/10.4236/ojas.2012.23025
|
[37]
|
Hughes, R.A., Inouye, B.D., Johnson, M.T.J., Underwood, N. and Vellend, M. (2008) Ecological Consequences of Genetic Diversity. Ecology Letters, 11, 609-623. https://doi.org/10.1111/j.1461-0248.2008.01179.x
|
[38]
|
Fisher, R. (1930) The Genetical Theory of Natural Selection. Oxford University Press, Oxford. https://doi.org/10.5962/bhl.title.27468
|
[39]
|
Choi, N.R., Seo, D.W., Jemaa, S.B., Sultana, H., Heo, K.N., Jo, C. and Lee, J.H. (2015) Discrimination of the Commercial Korean Native Chicken Population Using Microsatellite Markers. Journal of Animal Science and Technology, 57, Article No. 5. https://doi.org/10.1186/s40781-015-0044-6
|
[40]
|
Soltan, M., Farrag, S., Enab, A., Abou-Elewa, E., El-Safty, S. and Abushady, A. (2018) Sinai and Norfa Chicken Diversity Revealed by Microsatellite Markers. South African Journal of Animal Science, 48, 307-315. https://doi.org/10.4314/sajas.v48i2.11
|
[41]
|
Holsinger, K.E. and Weir, B. (2009) Genetics in Geographically Structured Populations: Defining, Estimating, and Interpreting FST. Nature Reviews Genetics, 10, 639-650. https://doi.org/10.1038/nrg2611
|
[42]
|
Beaumont, M.A. and Balding, D. (2004) Identifying Adaptive Genetic Divergence among Populations from Genome Scans. Molecular Ecology, 13, 969-980. https://doi.org/10.1111/j.1365-294X.2004.02125.x
|
[43]
|
Excoffier, L., Hofer, T. and Foll, M. (2009) Detecting Loci under Selection in a Hierarchically Structured Population. Heredity, 103, 285-298. https://doi.org/10.1038/hdy.2009.74
|
[44]
|
Simon, D.L. and Buchenauer, D. (Eds.) (1993) Genetic Diversity of European Livestock Breeds. Results of Monitoring by the EAAP Working Group on Animal Genetic Resources; EAAP Animal Genetic Data Bank, Institute of Animal Breeding and Genetics, School of Veterinary Medicine, Hannover. EAAP Publication, Hannover.
|
[45]
|
Nei, M. (1973) Analysis of Gene Diversity in Subdivided Populations. Proceedings of the National Academy of Sciences of the United States of America, 70, 3321-3323. https://doi.org/10.1073/pnas.70.12.3321
|